barSeed - Barley Seed Development Database

Probe CUST_29660_PI390587928

Source Contig U35_10539

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29660_PI390587928	Hv_44K_v2	CCGTCCGAATGTTGCTCAAATTTGGCAAAACAAAATTACAAAGTTTGTGCTTGCTTTAAA	588	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58522.1	3147	3e-22	3084 - 3142	98	58 / 59	plus	ABC47544
MLOC	MLOC_58522.2	3025	3e-22	2950 - 3008	98	58 / 59	plus	ABC47544
JLOC1	JLOC1_38035.1	3004	1e-22	2933 - 2991	98	58 / 59	plus
Harvest21	ABC47544	509	3e-25	15 - 74	100	60 / 60	minus	ABC47544
Harvest35	U35_10539	662	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_10539 662 Hv_44K_v2
GATGAAGAGGGAACACTTTCTGCAGCTCAAGCAGAGGGACGAGTTCATCCGTGGTTTGAT
CAACAGGAAGAATTCAAATGACCCTGAATCAGCAACAGCTGAGAGAAGGGTGATCAGAAG
GGCAAGCCTACGGAAGACCGAGAAAGATGCAGGCGAGCTGAAGAGCCCGAGCCACCGGTT
CACGTCACCTATTCCCACGGCTAAGAAGCGTACCTTCTGGGACTTTGGAGGCGAGAGCCC
TTCAGTTCTTGCTGGAAATGGGAGGAAGACTCGGAGCCATGTAGCTTCTGAAACTCCAAC
GAGGGCCCCTTCAATGCTACTTCAGCCGGGATTCACACGCCAAAGAGCCTAGCAGCACTG
GACCCTCAGGAGACGAATGCATGCAGAGGAGAGGATAGACGTGTTCATATCTTACTATTT
TTTTGTCAGCTATGTTAAGTGGAGTTTGTCATATTCTGTTGATTAAATTCAGTTTGCCTG
GGTTAACTGAACCAGCATAGAGTTTTATTAGCTTCTATCTCGATTTAAATTATTGAAAGT
GTAAAATATTTGGTCAGGGGAGAGAACATTTATTTTTGGTAACTGTTCCCGTCCGAATGT
TGCTCAAATTTGGCAAAACAAAATTACAAAGTTTGTGCTTGCTTTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_10539 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42070.1	777	5e-51	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g42970.1	779	8e-61
Arabidopsis v10	None