barSeed - Barley Seed Development Database

Probe CUST_29656_PI390587928

Source Contig U35_22513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29656_PI390587928	Hv_44K_v2	TGAGATCTACTTCCGCATGTAAATATGTGCTAGCTGCTACTCTTTATCTCTGTCAAAAAA	681	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.227	1.549	1.610	1.712	0.939	0.698
Raw	5.753	73.169	60.558	98.141	18.775	16.087

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63137.1	998	9e-22	73 - 127	100	55 / 55	minus	ABC17324
JLOC1	JLOC1_41349.1	883	5e-22	689 - 743	100	55 / 55	plus
Harvest21	ABC17324	752	3e-25	682 - 741	100	60 / 60	plus	ABC17324
Harvest35	U35_22513	752	3e-25	682 - 741	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_22513 752 Hv_44K_v2
CCTTCCTGCCACTCCTTTCTCTCTTCTCTTCTCCTGCCCCCTGATTTCCTGCACCCATCG
AGACGTACTGCTGGCTAGCTACAGATAACCTCGTCGGCCTCTGCTCGCTCCCCTCCGCCG
GCCTGCCACCCGATCGGTCCTGATGTCCGGCACCGTGTGCTCCATGTGCGGCGACGTCGG
ATTCCAGGACAAACTCTTCCGCTGCGCCCGTTGCCGCTGCCGCTTCCAGCACTCCTATTG
CACCAACTACTACGGCGACGCGGCCCCGGCCGACGCGGGCGCCGGCGTGTGCGACTGGTG
CCTCAGCGACGACCCCCTCCTGAAGAACAGGCGCCCTTCGGCCCCGCCGGGCGTCCAGCA
CCGCGGTCCTGCCACCGGGATGGGGTGCGGCAAAGTCAAGGTGACCGGCGGCGGCGAGCA
GGAGGGCGGCCGGAGAGTCGCCAAGGCGGCCGTCCGCAGGTACAAGCTCCTCAAGGACGT
CCTGTGCTAGCTAACGGATGCATGCATATGCATGGTCCTGGCCTGGGTCACAGCACTCCT
TTCCTTAGATCGGGACCTCGTCATCATGTGTACTATAAAATGATGCTGTTTAATTAGGTA
GTCGATAGTCGTTGTACCTAGTTAGCTGGTGAGGTTCTACTTCCATACCGATCCTTGTGT
GCAAATGTCTGCATGTCACAATGAGATCTACTTCCGCATGTAAATATGTGCTAGCTGCTA
CTCTTTATCTCTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None