barSeed - Barley Seed Development Database

Probe CUST_2964_PI390587928

Source Contig U35_11339

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2964_PI390587928	Hv_44K_v2	TGGACCAAGGACAGTAGATCAGTATCGGGGTTTATAGCATATGCTCTATGTGCAGCTGAT	419	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.633	2.206	1.221	0.712	0.372	0.388
Raw	2008.417	2636.883	1257.667	1126.803	212.258	248.445

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376587	1581	2e-24	375 - 434	100	60 / 60	plus	ABC14155 ABC14156
MLOC	MLOC_70308.1	1076	2e-24	447 - 506	100	60 / 60	plus	ABC14155
JLOC1	JLOC1_46658.1	983	8e-25	437 - 496	100	60 / 60	plus
Harvest21	ABC21601	479	3e-25	420 - 479	100	60 / 60	plus
Harvest35	U35_11339	480	3e-25	420 - 479	100	60 / 60	plus

Contig Sequence (480 bp)

>U35_11339 480 Hv_44K_v2
CCGGGCCGCCCGTTTGATGAGGTATTGTCTGCGTGCGAGCCAGAGCAGCCGATGCCCTGG
GCTGCGCCCTAGGATAGTCAGCTTCGCAGCAGCGCCTGATGAGCATGCTCCGCCGCGCTC
TCCTCCTCGGCCACCGCCACCGCCAAGGCTTCTCCTCGGGTGCGGACCTGCCTCCGCCGC
GCCCATCTGTCAGCCGCCGCGTGGTCGTAACGGGGCTGGGCGCCGTCACGCCGCTCGGCC
GCGGCGTCGGGTCCACCTGGGACCGCCTCGTGGACGGAGACTGCGCGGTGCGCGCGCTCG
CTGCGGAGGACCTACGCCTCACTGGGGATGCCGCGGGGAGGACGCTGGAGCAGCTCCCAT
CCAGAGTCGCCGCCGCCGTGCCGCGCGGGAAGGGCGAGGCCGAGTTCGACGAGGAGGCGT
GGACCAAGGACAGTAGATCAGTATCGGGGTTTATAGCATATGCTCTATGTGCAGCTGATG

Homology of Contig U35_11339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g07140.1	461	2e-51
Arabidopsis v10	None