barSeed - Barley Seed Development Database

Probe CUST_29646_PI390587928

Source Contig U35_10544

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29646_PI390587928	Hv_44K_v2	TCAGATACTGACAGAGATCAAGATGATGATGTGTTGCAGAATGTCACTGCTACCAGCACC	427	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11892.1	2363	2e-24	690 - 749	100	60 / 60	plus	ABC14964
JLOC1	JLOC1_7930.1	2385	8e-25	686 - 745	100	60 / 60	plus
Harvest21	ABC24304	610	3e-25	428 - 487	100	60 / 60	plus
Harvest35	U35_10544	610	3e-25	428 - 487	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_10544 610 Hv_44K_v2
GCAGGAGCTGCTTGCCTTGGCTTGGCTTGCTGCCTTTCACTTTCACGTCCACCTATGCGG
GCGTGAGGCGTGGAATCCAAACAATGGCGCTGGGATCCGCGGATCTATAGGCGAGGCGAG
GCGCGGGATGGGATCTGGGAGCAGCAAGGCCGCTTCCGCGCCGCCGTCAGCCGGCGGCGA
CGCTGAAAAGACGCGGAATGGGAAGCCGAGGGGGAGGAGCCTGATGCGCCTGCCCAGCTA
CTCCTGCTTCCGGGGCTTCGCGCCCGAGTGTGACGCTTCCTCTTCGCTGCCGGCGCCGGC
GCCGCCGCTAGGGGTCGAGTCTGGCAAGGGAGGGGAGGTGCCTTCACTCACTCACATTGG
CGTATCAGATGAAGATGCTCCATCGGCTCCTAAACCGAATCCAAGTGAAGGCAGAATGGC
GCCTTCATCAGATACTGACAGAGATCAAGATGATGATGTGTTGCAGAATGTCACTGCTAC
CAGCACCGCAGTCGACGACAGCCAATCGCCAAATCCTTCTGACAGGTCGAGGCCATGCTT
TGGTGTCAACTTTGGGTTGAGTAGAGCTGTCAGCTTGGGATCATCAGTGGCATGCTCCAT
AATGTCAACC

Homology of Contig U35_10544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None