barSeed - Barley Seed Development Database

Probe CUST_29641_PI390587928

Source Contig U35_22520

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29641_PI390587928	Hv_44K_v2	GATTCAAGGAATTCAGTTTTCTATGGAGATCCTGTCTGTCTTCAAACAATGGTACAGGCT	996	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.071	1.360	2.203	1.897	0.453	0.436
Raw	25.525	49.598	70.028	97.368	7.515	8.143

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51828.1	1820	2e-24	971 - 1030	100	60 / 60	minus	ABC17585
MLOC	MLOC_51828.2	1621	2e-24	821 - 880	100	60 / 60	minus	ABC17585
MLOC	MLOC_51828.3	2381	2e-24	776 - 835	100	60 / 60	minus	ABC17585
JLOC1	JLOC1_33138.4	2448	8e-25	1016 - 1075	100	60 / 60	plus
JLOC1	JLOC1_33138.3	2210	8e-25	778 - 837	100	60 / 60	plus
JLOC1	JLOC1_33138.2	2172	8e-25	740 - 799	100	60 / 60	plus
JLOC1	JLOC1_33138.1	2424	8e-25	737 - 796	100	60 / 60	plus
Harvest21	ABC17257	1070	3e-25	997 - 1056	100	60 / 60	plus
Harvest35	U35_22520	1070	3e-25	997 - 1056	100	60 / 60	plus

Contig Sequence (1070 bp)

>U35_22520 1070 Hv_44K_v2
GTCGTAGTTATTCTTCTTCATTGTATAGAAGAGGAAATGCATTTCAGTGTTAGGTGTGGA
GCTCTCCAGGTGTTGAGATCAGTGGTTCATAATTACCCAAGCTGTGCAAACATCATTTGG
GAAAAAGTTCGAGACATCATCCTTGATTTATTGCAAACGGAGAGCTTTGAAGACCAAAAA
TGTGATGCTAACTTTGGTCCTCCTAAAGAAGAATTGTCTACTAAAGGAAGATGTCTTGTA
GCTGGTATTAAGGTAATTGATGAGTGTCTGCGTGTTTCATCTGGATTCAAGGGCGCGGAT
GACCTCAAAGAGTGTAGATTGCTGGATATTCAGCAAATTTCAGACTGCACTGTAAATAAA
ATTATTAAATCTGCGCCTCACTTTGAAATTGAAACCCCTGGACCATCACAAAACTGCTCT
TTGGACATTACACTTGGAACCAACCGTTGGACTGAGGTGTTAGAAACTCATCTCCCTCGG
GGCTTATCACATGCCTCTGCTATGGTCAGGACAGCATCACTCACATGTTTTGCTGGCATG
ACCTCTGATGTTTTTTTCTCCCTATCAGTAAACAAGAGAGATTATGTGACCTCCTCATCT
GTTCATGCAGCATTGAGTGATGCAGTTGCTACAGTGAGATCAGCTGCATGTCGAGCCATT
GGTATTGTTTCATGTTTCTCCCAAATATTGTCGAGTCCTAGCCTACCTGGCGAGTTCATA
AAAGCCATTGACTTCAATACACAAAATTCATCAACTCCAGTCCGTATCACTGCCTCATGG
GCTTTGGCCAATCTTTGTTCTTCTATTCGTTTCAGAGCATTGGAACTACAGACAGATCCT
ACTGCAGATCTACTTGATAAATCAACAATTTCATTGTTGGTTGAAATTGCTTTGCGCCTA
ACCAAAGATGGCGAAAAAGTAAAGTCAAATGCCGTTAGAGCTCTTGGATATCTGTCAAGG
TTTATCAGATTCAATCATCATTGTGATTCAGTCGATGATTCAAGGAATTCAGTTTTCTAT
GGAGATCCTGTCTGTCTTCAAACAATGGTACAGGCTNTGATGTCTTCTGT

Homology of Contig U35_22520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g05670.1	512	3e-159	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g17027.3	955	0.0
Arabidopsis v10	AT4G38120.1	1165	4e-68	ARM repeat superfamily protein \| chr4:17888668-17896060 REVERSE LENGTH=1165