barSeed - Barley Seed Development Database

Probe CUST_29640_PI390587928

Source Contig U35_22521

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29640_PI390587928	Hv_44K_v2	TTGGATGACGTCAATGGTACAAACACTATTTCAGCAGAGTTCGCATCAAGCTTGAAAGCT	1102	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56893.8	705	2e-24	112 - 171	100	60 / 60	plus	None
MLOC	MLOC_56893.13	4043	2e-24	420 - 479	100	60 / 60	minus	None
MLOC	MLOC_56893.14	3371	2e-24	420 - 479	100	60 / 60	minus	None
MLOC	MLOC_56893.15	3707	2e-24	420 - 479	100	60 / 60	minus	None
MLOC	MLOC_56893.9	1819	2e-24	420 - 479	100	60 / 60	minus	None
MLOC	MLOC_56893.1	3953	2e-24	569 - 628	100	60 / 60	minus	None
MLOC	MLOC_56893.10	3852	2e-24	420 - 479	100	60 / 60	minus	None
MLOC	MLOC_56893.11	3516	2e-24	420 - 479	100	60 / 60	minus	None
MLOC	MLOC_56893.12	3180	2e-24	420 - 479	100	60 / 60	minus	None
MLOC	MLOC_56893.5	3501	2e-24	560 - 619	100	60 / 60	minus	None
MLOC	MLOC_56893.6	3837	2e-24	560 - 619	100	60 / 60	minus	None
MLOC	MLOC_56893.2	4152	2e-24	569 - 628	100	60 / 60	minus	None
MLOC	MLOC_56893.3	3816	2e-24	569 - 628	100	60 / 60	minus	None
MLOC	MLOC_56893.4	3459	2e-24	561 - 620	100	60 / 60	minus	None
MLOC	MLOC_56893.7	3999	2e-24	554 - 613	100	60 / 60	minus	None
JLOC1	JLOC1_36819.10	4029	8e-25	3363 - 3422	100	60 / 60	plus
JLOC1	JLOC1_36819.9	4038	8e-25	3372 - 3431	100	60 / 60	plus
JLOC1	JLOC1_36819.8	3693	8e-25	3027 - 3086	100	60 / 60	plus
JLOC1	JLOC1_36819.7	3357	8e-25	2691 - 2750	100	60 / 60	plus
JLOC1	JLOC1_36819.6	3483	8e-25	2817 - 2876	100	60 / 60	plus
JLOC1	JLOC1_36819.5	3808	8e-25	3142 - 3201	100	60 / 60	plus
JLOC1	JLOC1_36819.4	3272	8e-25	2606 - 2665	100	60 / 60	plus
JLOC1	JLOC1_36819.3	3971	8e-25	3305 - 3364	100	60 / 60	plus
JLOC1	JLOC1_36819.2	3754	8e-25	3088 - 3147	100	60 / 60	plus
JLOC1	JLOC1_36819.1	3520	8e-25	2854 - 2913	100	60 / 60	plus
Harvest21	ABC19646	1162	3e-25	1103 - 1162	100	60 / 60	plus
Harvest35	U35_22521	1162	3e-25	1103 - 1162	100	60 / 60	plus

Contig Sequence (1162 bp)

>U35_22521 1162 Hv_44K_v2
GTCAGAAGCAACACCCCCAGCAGGCAATGCTCCTGACTCGAGTAATCAAAAAGACGTTGA
ACACGGAGAAAAACTGCAAAGAGTTCTTAATCAGAAACATCAGTCTCTGCAGCCCCAGCA
GCCCCAAGATGACCAGCAGTGGTTACTTACTTGCATTCCACAATATCTTGGATTTTCTGG
GAGCAAGCCTGTTGCCACTCTTCTTATATACCAGTCTCTTCTTCACTGGAGATCATTTGA
AGCCATGAAAACTGGTGTATTTGACAGAATTCTGAATGCTATAAACTCTGCAATAGAGGC
TGAACATGATGTGAGAACATTGGCATATTGGTTGTCCAACTTATCTGCATTAACAGTTCT
CCTTCAACGATCATTCAAAACTACTAGGACCGCACTCTCAACCCCGCAAAGGCGAAGATT
TTCATCTGAGAGGATATTTCATACAAGTCAAACTTCAAATGCTGGGCTTGCTTATCTCGG
TGGGCAATCAGTTGTTGGAGCTACTGGATTACCCCAAGTCGAAGCAAAATATCCAGCTTT
GCTCTTTAAACAGCAGCTTGTGGATCTAATTGAGAAGGTTTATGGTATGATAAGCGACAG
TGTGAAGAAGGAACTAAACCCTTTACTTGAATTGTGCATCCAGGATCCACGTTCTTCTCA
CTCAAATCTGGCAAAAGGCAATACAAATGGCTTGGGACAACAGAACCAATTAGCACATTG
GTTAAGCATCGTGAAAGTCCTAGCCAACTATTTGGATATATTAAAGGCGAACCATGTCCC
ATCAATTTTGGTGCATAAGTTGTTCGTACAGATATTTTCACTGATTGATGTTCAGCTATT
TAACAGACTCCTTTTGCGGCGTGAGTGCTGTTCATTTAGCAACGGGGAATATGTCAAAGC
TGGACTAGCTGAGCTAAAACACTGGTCTGATAATGCTACTCGAGAGTTTGCAGGTTCGGT
CTGGGAGGCATTGAAGCATATCAGACAGGCTGTTGATTTCTTGGTGATTTCTCTAAAGCC
AATGAGAACACTAAGAGAGATACGTGCTGATGTGTGCCAAGCCCTTAGCATACAGCAGCT
AGAGCGCATAGTTGGTATGTACTTGGATGACGTCAATGGTACAAACACTATTTCAGCAGA
GTTCGCATCAAGCTTGAAAGCT

Homology of Contig U35_22521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51630.2	368	0.0	protein\|XIE, putative, expressed
Brachypodium v1_2	Bradi2g48076.2	2332	0.0
Arabidopsis v10	AT5G20490.1	1545	7e-117	\| Symbols: XIK, ATXIK, XI-17 \| Myosin family protein with Dil domain \| chr5:6927064-6936825 REVERSE LENGTH=1545