barSeed - Barley Seed Development Database

Probe CUST_29633_PI390587928

Source Contig U35_22529

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29633_PI390587928	Hv_44K_v2	AGCATCGCAGCCAGTAACAGAGGAGGTCGTAACACAATTGCATTTTCCTCTAGTTCATCT	951	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374531	3118	2e-24	1578 - 1637	100	60 / 60	plus	ABC20523
MLOC	MLOC_61713.1	2581	2e-24	970 - 1029	100	60 / 60	plus	ABC20523
MLOC	MLOC_61713.2	1885	2e-24	958 - 1017	100	60 / 60	plus	None
JLOC1	JLOC1_40340.2	2469	8e-25	784 - 843	100	60 / 60	plus
JLOC1	JLOC1_40340.1	2611	8e-25	920 - 979	100	60 / 60	plus
Harvest21	ABC39240	561	3e-25	499 - 558	100	60 / 60	plus
Harvest35	U35_22529	1014	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1014 bp)

>U35_22529 1014 Hv_44K_v2
CCGGCGCCGGTGGTCGTGATGCTGCCACCGAGCCGGCGCCCGCCCGCTCCCGGGTCGCCC
ACGCACGCCACCCGGAGCCACCACAGCGCCGACCTGCCGGCGAGGAGCCCGAGGCGGACT
CGCCTCGTGCACGCCGCCGCGTCGAGGCTGCTGGAGCCGGGGGCGCGCGGGAGCTCGAAG
GCGAGCGCCCGGCTGCAGGCCATGGCGTACGCCTGCTCCTCGCCGCAGCACCGCGGCCAC
CCCGGCGCCCCGCAGCAGAGCTGGGGCACGCTCGAGATCGACGACTTCCTGTCTCGCTCC
GACAGCCTGTCGTTAGAGCGTCGGGCACCTCCTCCTCCTCCTCCTCCGGCGGATACAGAC
CAACGGGGCAATGCCGTCAGTTCCCGCTGGCAGGAGGCAGACCCCGTCAACACCATGAGC
GGCACTGCTGCTGCAGGCTCAGTGACAAGCACTAGTCATACTATTGTGGTACCAAGAGTG
GATTCCTACGATGCACACATGAGTAGAAGCAGCAGCTCTGATGTGGATGCAATGCAAAGA
GATTATAGGGCAAGAACTGGGGGAATGGGCAGTTATGCCGGGGTCAGATCGAGCAATGCC
GGTGCCGGCGCAAGAACCGGAGAACAGAGGCTGTCGCGCAAACGGGGCGCCTTGTCTAGG
CCAGATGTTCCAAGGAGTGCTGGGTCTGGGAACTTGGCTAGTTCAACGCGTTCGATGGGC
AATGCTCGTGAATCGGCACCTGCTAGTAGTAGGAGAGCAGCACACAATTCTGGTAGTAGT
AGTATGAGGGCACCACACAATTCTGGTCTGAGGAGGGAGTCGATGAGTTCGACCACCCCA
CAAAGAAGCACACTAAGAGACGTGATCGACCGAAATGGGTCGGCGTCCACAAGTAGGGAT
ACAAGCAATGCATCTGGGCAGAGGAGAGGATCACGCAAGAAAATCGACCATAGCATCGCA
GCCAGTAACAGAGGAGGTCGTAACACAATTGCATTTTCCTCTAGTTCATCTGCG

Homology of Contig U35_22529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g02210.1	861	4e-82
Arabidopsis v10	None