- Probe CUST_29630_PI390587928
- Source Contig U35_34502
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29630_PI390587928 | Hv_44K_v2 | GTGTCTTTTCCCGTATATGCTTTTCTAATTCTAATCAAGATTAAACTTGATTTTCCGGCC | 107 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.911 | 4.102 | 1.105 | 0.832 | 0.305 | 0.399 |
| Raw | 142.018 | 153.483 | 34.478 | 41.938 | 3.867 | 7.141 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_202.1 | 393 | 6e-24 | 108 - 166 | 100 | 59 / 59 | minus | None |
| JLOC1 | JLOC1_138.1 | 354 | 3e-24 | 81 - 139 | 100 | 59 / 59 | minus | |
| Harvest35 | U35_34502 | 184 | 3e-25 | 108 - 167 | 100 | 60 / 60 | plus |
Contig Sequence (184 bp)
>U35_34502 184 Hv_44K_v2 GGGGATCGATTACCTCTACAACTACGATCCATGAGCGGACCGGTCTTGTTTTCCTTTTCG TGTGGAACTCGGCATGAGGAGCTGTATATGCTGGATCGAATTGATGTGTGTCTTTTCCCG TATATGCTTTTCTAATTCTAATCAAGATTAAACTTGATTTTCCGGCCAAAAAAAAAAAAA AAAA
Homology of Contig U35_34502 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |