barSeed - Barley Seed Development Database

Probe CUST_2962_PI390587928

Source Contig U35_23311

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2962_PI390587928	Hv_44K_v2	GGTTGCCATTGTATTACACTTGTAGAGCTCAGTTTGTTATTGTGATTGCCATTGTATTAA	972	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81840.1	2276	6e-24	77 - 135	100	59 / 59	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.5	2783	6e-24	28 - 86	100	59 / 59	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.4	2901	6e-24	29 - 87	100	59 / 59	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.2	2060	6e-24	77 - 135	100	59 / 59	minus	ABC17119 ABC35045
MLOC	MLOC_81840.3	2172	6e-24	77 - 135	100	59 / 59	minus	ABC02837 ABC17119 ABC35045
JLOC1	JLOC1_54437.6	1853	3e-24	1712 - 1770	100	59 / 59	plus
JLOC1	JLOC1_54437.5	2181	3e-24	2040 - 2098	100	59 / 59	plus
JLOC1	JLOC1_54437.4	2626	3e-24	2485 - 2543	100	59 / 59	plus
JLOC1	JLOC1_54437.3	2842	3e-24	2701 - 2759	100	59 / 59	plus
JLOC1	JLOC1_54437.2	1958	3e-24	1817 - 1875	100	59 / 59	plus
JLOC1	JLOC1_54437.1	1629	3e-24	1488 - 1546	100	59 / 59	plus
Harvest21	ABC17119	1046	3e-25	15 - 74	100	60 / 60	minus	ABC17119
Harvest35	U35_23311	1046	3e-25	973 - 1032	100	60 / 60	plus
Harvest35	U35_24987	700	1e-24	587 - 645	100	59 / 59	plus

Contig Sequence (1046 bp)

>U35_23311 1046 Hv_44K_v2
GGAATTATCGAACCATGCCAGCTGATTTACATCTGACAAAGTCTACAGGAATGTTTGAGT
TCTCGAAATCCTTAATATCGATGCTTTACTTTTGAGAAGCAGAAAGTTTGTAGTGGCTCC
TGTTGTATTGATTAACCATTTGCTACTTCCAGTTGGGAGAAGCCAGGTCACAGCCCCCTT
CTAGCTTTTGTTCTATTTTAGACGCTGAATTCTTGCAATTCTAACAAAAGTGTAGTTTAT
AAGAAACCAATTTGACTATACAAGATTGTTGTGCCATCAGTGTGCGTAGTTTTTTTTTCC
TATTAGTAGAAATGTGTTAGCTGTCAGTGTAATATACAAGATTGTTGTGCTATCTGCTAA
GGACTTTGGTATTAACTCACTTGAGATGTATTGGGAATTTTGACTCATCCTATAACCTGG
AGCTATTAGAATCATAAGGTTATATTTTACAGTGCAAATGCTAATGTTACATCCATCGCC
GGAGTCTACTGCAGGTGGCAATTGGTTCTTTTTCTGCGGTTTTCCCTAGGCATGAAGCTG
CTCATTTTCTGGTTGCCTATCTGACTGGCCTACCTATCTCGGGATGCTCTTTGGACATTG
GTAAGCAGCATGTTAACCTCGTTGATGACCACCTACAGAAGATGCTATATAGTGGCCAGC
TCGATCAAAAGGAAGTGGATAGGTTGGCTGTGATCTCCATGGCCGGACAGGCTGCTGTGG
GTTTGGAGTACGACAAGGTCGTTGGCCAATCAGCCGTCCTCTTCACTCTTCAGAGATTTT
TGAACAGAACTAAGACGCCGCTAGGCAAAGCATAGCAGCAGAACCTTACGAGATGGGATC
TCCAGGCCTAAGAAAGTTGAAGTGCGAAGCCTCAAAGCCAATTGTGTGAAGCCCTACTTA
TCCAAGAATGCATAATTATATATTGTAATAGTAGGCATATCAACTTTGTAAGAGACTGAA
AAAATTCATAGTGGTTGCCATTGTATTACACTTGTAGAGCTCAGTTTGTTATTGTGATTG
CCATTGTATTAAAAAAAAAAAAAAAA

Homology of Contig U35_23311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54640.2	309	1e-54	protein\|peptidase, cysteine peptidase active site, putative, expressed
Brachypodium v1_2	Bradi5g23437.1	327	4e-57
Arabidopsis v10	None