barSeed - Barley Seed Development Database

Probe CUST_29623_PI390587928

Source Contig U35_10550

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29623_PI390587928	Hv_44K_v2	ATCATCAGCTTACCTATGTGGCTAATGTAATCGTCGCAGGGTTACATGTTTACAGATAAA	433	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12477.1	1701	2e-24	1641 - 1700	100	60 / 60	plus	None
MLOC	MLOC_12477.2	1696	2e-24	1636 - 1695	100	60 / 60	plus	None
JLOC1	JLOC1_8372.1	1740	8e-25	1646 - 1705	100	60 / 60	plus
Harvest35	U35_10550	507	3e-25	434 - 493	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_10550 507 Hv_44K_v2
CCCGGATAGCATGGTCTTAGGATACTAGCACCGGTGAGCGAACATCCATTGCCGGTCCTC
TTCCTTCGATCCTCCACACAAAAAAGGCGGTGCGAATCGGCAGGAAACCGTACAATGGTG
GCGTGGCGTGGCAACTCGGCTCGAGTTCTTTGCGAGAAAATCCTTAGTTTCTTACGCGTG
TGCACGCGTCTCCGAAGAAAACAACAGGGGAGCGTGTATTTGCATTTAGACTGGTATAGT
TTCGTGACGGTAAATCGGGGTGTCACAGATGGTAAGAAGAGTTTTTGCAGTGATTGGGGG
TGAAAGGAGAAAATGAAAGGAGAATTTGTACATACATGCAGCGTGGTCGATTAGTTGGTG
AAATGAAGATATTGTTGATTAATTGATTATTACTTGTAGTATATAACCTGTTTTGTAGAT
TGGCTGATTGGTCATCATCAGCTTACCTATGTGGCTAATGTAATCGTCGCAGGGTTACAT
GTTTACAGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_10550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None