barSeed - Barley Seed Development Database

Probe CUST_29620_PI390587928

Source Contig U35_10554

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29620_PI390587928	Hv_44K_v2	TGGTTATTAGCTTCTTCTTGCTTCAACCCACAGCCAGCTCAAGTGCAATTAATCACCCGT	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75172.2	1931	2e-24	61 - 120	100	60 / 60	plus	ABC30512 ABC40048
JLOC1	JLOC1_50134.1	549	8e-25	45 - 104	100	60 / 60	plus
Harvest21	ABC23931	553	3e-25	9 - 68	100	60 / 60	plus
Harvest35	U35_10554	555	3e-25	9 - 68	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_10554 555 Hv_44K_v2
CAAACCACTGGTTATTAGCTTCTTCTTGCTTCAACCCACAGCCAGCTCAAGTGCAATTAA
TCACCCGTCTGGTGCAGTGCTGCTACGCCGATGGCCGGCACGATGCTACCGCCGCCGAGG
CCACTGCTGGCCGCCGCCGGTGCGCTCTCCTTCTGCTTGTGCAGCTCGCTGCTGCTGGCG
GTGGCCGATGCCAGGGTGCACAACTACACGTGGGACATCTCGTACCAGTACAAGTCCCCC
GACTGCTTCGAGAAGCTCGCCGTGACCGTCAACGGCGAGGCGCCCGGCCCGACCATCCGC
GCCACGCAGGGCGACACCATCGTCGTCAACGTCCACAACAAGCTCGAGACCGAGAACACC
GCCATCCACTGGCACGGCATCCGCCAGATTGACACGCCGTGGGCTGACGGCGTCGCCGGC
GTCACGCAGTGCCCCATCCTTCCCGGCGAAACCTTCGCCTACAAATTCGTCGTCGACAGG
CCTGGCACGTACCTGTACCATGCGCACTACGGGATGCAGCGCGTGGCGGGGCTCAACGGC
ATGATCGTGGTCAAG

Homology of Contig U35_10554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32952.1	575	1e-69	protein\|L-ascorbate oxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g34690.1	581	2e-70
Arabidopsis v10	AT4G39830.1	582	5e-58	Cupredoxin superfamily protein \| chr4:18479103-18481184 FORWARD LENGTH=582