barSeed - Barley Seed Development Database

Probe CUST_29608_PI390587928

Source Contig U35_39749

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29608_PI390587928	Hv_44K_v2	CGAACGATGAGCTCGATGGTAATTATCTCCTTAGTTGCTTTCCATTTACAGACCCGGCAT	508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368553	2134	2e-24	747 - 806	100	60 / 60	plus	ABC12767
MLOC	MLOC_5523.1	1915	2e-24	508 - 567	100	60 / 60	plus	ABC12767
JLOC1	JLOC1_3556.2	1437	8e-25	235 - 294	100	60 / 60	plus
JLOC1	JLOC1_3556.1	1797	8e-25	371 - 430	100	60 / 60	plus
Harvest21	ABC35951	586	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_39749	586	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_39749 586 Hv_44K_v2
GCGACCGTTACGCCTCTTTCCGCGCCCGAACCCGACGCCTTAGCTCGCCTCGACAACCTT
CCCCGGCCCAGCGTGGCAATTTCATGGGATACTCAAGCTCTATGCAAGCATGCGGAAACC
TGCGAGTTGGGATCGGAGGCTTTCCTGATTGATCCCGCTCTGCTTCCAACCCTAGAAGGT
CTACTTCTAGAAACATATGCTATGTTGCGCCCAAAGCCAGTTGACTATGAGCAACGACGT
ACTATGATAGACGTCTTCAACAAAATTGCCAAAGATATTTTTGGTAAAAAAGATGAATTT
CCAGTTGTGGAACCTTTTGGGTCATTCACAATGGATCTATTTACTACTAAAAGTGATCTT
GATCTCTCTGTCAACTTTAGCAATGATATGGATGGTCAATTTGCTCGCAAGGACAAGATT
TCTGTTATTAGAAAGTTCGCAAAAGTCCTACAGAAGCATCAGAATGAAGTTCTGGGCTAA
GACACATGATGTTAATTGTCCCAAAGATCGAACGATGAGCTCGATGGTAATTATCTCCTT
AGTTGCTTTCCATTTACAGACCCGGCATCCTNCAATATTACCTGCA

Homology of Contig U35_39749 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44560.1	581	1e-52	protein\|expressed protein
Brachypodium v1_2	Bradi3g42980.1	571	1e-61
Arabidopsis v10	None