barSeed - Barley Seed Development Database

Probe CUST_29592_PI390587928

Source Contig U35_27778

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29592_PI390587928	Hv_44K_v2	CATATATGCCACCATCCAAGAGCAAGTTGAGATCCTAGCAAAATCTAATGCTTCAAGTAA	476	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.625	0.492	1.275	1.759	1.129	1.023
Raw	286.791	307.159	798.877	1699.012	393.938	385.272

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366523	2304	2e-24	1516 - 1575	100	60 / 60	plus	ABC16500
MLOC	MLOC_43072.2	1681	2e-24	423 - 482	100	60 / 60	minus	ABC16500
MLOC	MLOC_43072.3	1854	2e-24	519 - 578	100	60 / 60	minus	ABC16500
MLOC	MLOC_43072.1	1950	2e-24	673 - 732	100	60 / 60	minus	ABC16500
JLOC1	JLOC1_27824.1	2107	8e-25	1214 - 1273	100	60 / 60	plus
Harvest21	ABC23528	538	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_27778	539	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (539 bp)

>U35_27778 539 Hv_44K_v2
AACTATTCAAACGGGCAAAAGAATGGGGACTCAAAGTTTTCTTCATTGCAAGCACTTTCT
AGTGCCATGCAGTTGCTTCACAAGCATGAATTTAGAGATCAGCATAACGAGTGGATAAAC
TCGGCAAAGTCGTCTGTTGATGCTTCCATAGTTGGTAATTTGTCTGATGATGGTGATTCG
ACTATTAATATCATCCAAGATGTAAGAAAGGAAGTGCGCTTAGCTCTCAACACACTTCTT
AAGGATGATGGGATTCTGGTCATCCCAACTGCTTTGGGATGCCCTCCAAAAATTAATGCT
AGGGAGCTCTCATCTACAAGCTACAATGCTGAGACATTGTGCCTTCAATCTTTATCTAGT
ATGTCTGGGTGTTGTCAGGTTACTGTTCCCATTGGTACACATGACAAGTGTCCTATTTCG
GTTTCCTTCATCGCAAGGCATGGTGGTGATCGTTTTTTGCTGGACACCACTCAAGCCATA
TATGCCACCATCCAAGAGCAAGTTGAGATCCTAGCAAAATCTAATGCTTCAAGTAAAGA

Homology of Contig U35_27778 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50010.1	587	4e-84	protein\|toc64, putative, expressed
Brachypodium v1_2	Bradi1g11110.1	589	1e-96
Arabidopsis v10	None