barSeed - Barley Seed Development Database

Probe CUST_29582_PI390587928

Source Contig U35_27783

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29582_PI390587928	Hv_44K_v2	TGTGAACGAGTCGGACCTCGACAAGCTCCCCTTCCTCAAGTGTGTCATCAAGGAGACGCT	130	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66597.2	1038	2e-24	832 - 891	100	60 / 60	minus	ABC11969 ABC49668
MLOC	MLOC_66597.1	2272	2e-24	883 - 942	100	60 / 60	minus	ABC11969 ABC49668
JLOC1	JLOC1_43908.1	2179	8e-25	1130 - 1189	100	60 / 60	plus
Harvest21	ABC24597	338	3e-25	131 - 190	100	60 / 60	plus
Harvest35	U35_27783	338	3e-25	131 - 190	100	60 / 60	plus

Contig Sequence (338 bp)

>U35_27783 338 Hv_44K_v2
CGTGATGTTTGGCGGGACCGAGGACGGTGGCGTCGGCAATTGAGTGGGCGATGGCGGAGA
TGATGCACAGCCCGGACGACCTCCGTCGATTACAGAAGGAGCTCGTCGACACGGTGGGTC
TCGACCGGAATGTGAACGAGTCGGACCTCGACAAGCTCCCCTTCCTCAAGTGTGTCATCA
AGGAGACGCTCCGGCTGCACCCGCCCATCCCACTGCTCCTTCATGAGACCGCCGAAGACT
GTGTTGTCGGGGGCTACTCCGTGCCCCGAGCCTCTCGCGTCATGATCAACGTCTTCGCCA
TCGGCCGCGACGCCAAGGCATGGAAGGATCCGGACACA

Homology of Contig U35_27783 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None