barSeed - Barley Seed Development Database

Probe CUST_2957_PI390587928

Source Contig U35_23317

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2957_PI390587928	Hv_44K_v2	TTGAAGAGCCTAGGCATGTGAAGGAAAATAGCTCAACCAGGCATACAATAAAGCCCAGTG	1231	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.667	1.594	1.016	0.767	0.507	0.411
Raw	160.342	213.869	134.257	144.895	36.676	32.978

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369711	2743	2e-23	1677 - 1734	100	58 / 58	plus	ABC15344
Harvest21	ABC17396	1297	3e-25	1232 - 1291	100	60 / 60	plus
Harvest35	U35_23317	1297	3e-25	1232 - 1291	100	60 / 60	plus

Contig Sequence (1297 bp)

>U35_23317 1297 Hv_44K_v2
GAGGAAGGGTCGGGCGACTCCGTCGACGAGGAGGAGGAGGAGGAGCTGAGCCGGAGCAAG
CGCCGGAGGAAGCGCGGCCGCAGGGGCCGCCGCGACTTCTCCGACGAGGATGAATCCAGC
GCCGAATCTGATGAAGGGAGAGGTAGTGGCAAGGGGAAGCGAGGAGGGGTTGCAAGTGAT
GGTGATGAAGAGGAGGAGGAGATGGGAGGTGACGGGATGAGGGCAAGTGAGGTTGTCAGG
AAGGAGATGGGGCTTGAATGGATGCTTAAATCTGCAAGCACCAGTCAGCCGGAGGGCAGC
CGTGCTCAGAGGGCTGATAACGACGAGGAGAAGTTTGAGGCTACACATGAAGAGGTGAAG
AAACCTAACCCGAAAGAAATGAACCCCTATATGAGGGACAATGGCAGTGGCTATCCCGAT
GAAGCCACCGCCGCAAAAGCAGCCAGTCAGTTGCTTGCGTCCTCCGTTGTTGGTGACGGA
GGTGCTAGCTGGCGGCTTAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAGGT
AGAAAGATTGAGGAGGTAGTTGAAGAGAGATGGGGCTCATTGGGCCACTTAGCCGCATCA
GTATCAACGTCCAGAATTGCCCCTTCTTATGCTCATTTGCAGGCCATTAGGGCTAGAAAA
GCTGGACAGGCAAACAACTCCGAGAAATCCTCCAAAGTAGATCAGCAGGAGGATCAGCGC
GGCGAAGAGAGTGGTGGTGGTCGCCAATATTTGCAAGGTGTCTCCTCTCGGGATCATGCC
ATGAGGAAACCCAGACCCGATTCTGTAACTTGGAAGAAGAATAGACAGAATATGTCTTCC
GAAGATCGAACGCTCATCTCGTCTGCACTAGCAAGTATCAATAAATTTTCCAACGATGGA
AGCTTTATGGATAAAATCAGTAACCATGATAGTAAAAATACAAATGCTTCAAATGTCGAG
AAAAGGGATAGTGAGCAGAAAGCCCACCAGGAGAGTTCAAAGATATCATCTTCAGTGAGC
ACACAAAGGCAGGAGAGTTCAAAGATATCATCTTCCGTGAACACACAAAAGCAGGAGAGT
TCAAAAATATCATATTCAGTGAGCACTCAAAAACTAAATGCAAACCAGTTAGCTGCGAAG
GTTCTGCAGCTCCGAATGAAAGGCAAGCACGAAGAAGCTGACCAACTTTCGAGAGAAATG
GAGACTGTGCTGGAAAACCAGAGTGCTTCTGTTGAAGAGCCTAGGCATGTGAAGGAAAAT
AGCTCAACCAGGCATACAATAAAGCCCAGTGCAGCTG

Homology of Contig U35_23317 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52980.1	760	8e-136	protein\|CWF19-like 2, cell cycle control, putative, expressed
Brachypodium v1_2	Bradi1g09200.1	752	7e-158
Arabidopsis v10	AT1G56290.1	692	5e-70	CwfJ-like family protein \| chr1:21075939-21078608 FORWARD LENGTH=692