barSeed - Barley Seed Development Database

Probe CUST_29579_PI390587928

Source Contig U35_27787

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29579_PI390587928	Hv_44K_v2	TGCTTTCTTCCACGCACTAGATCTTGTGAATTTCCCGTCTCCATCTGATTTCGAGATTCG	186	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10591.1	2400	2e-24	310 - 369	100	60 / 60	plus	ABC47537 ABC49616
MLOC	MLOC_10591.2	2180	2e-24	257 - 316	100	60 / 60	plus	ABC47537 ABC49616
JLOC1	JLOC1_6937.2	2124	8e-25	240 - 299	100	60 / 60	plus
JLOC1	JLOC1_6937.1	2286	8e-25	246 - 305	100	60 / 60	plus
Harvest21	ABC22060	570	3e-25	187 - 246	100	60 / 60	plus
Harvest35	U35_27787	570	3e-25	187 - 246	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_27787 570 Hv_44K_v2
GGGCGATCTCTCGTCTTCCGAAGCCACAGTCCTCTCGCTCTCGCGCCCCCGCCACAGTTT
GTAGCACGGCTGGCAGCAGCAGGGTGCCTCGCCTCGCCGGGAGCTGGAAACAAGCACTGT
ATGATCTTTTTTCGCCACTGAGCTGTGCCTCCAACGTGTTTGCGTGAATGCGCAGGCGGA
CGCGCTTGCTTTCTTCCACGCACTAGATCTTGTGAATTTCCCGTCTCCATCTGATTTCGA
GATTCGCCGCTGACCATGGCTGACGCCTCCGCCGGCGGCTCCCTGGACGACTACCCAACC
ATCGACCCAACCTCTTTTGACGTGGTCCTCTGCGGCACCGGCCTCCCAGAGTCCATCCTC
GCCGCTGCCTGCGCGGCCGCCGGGAAGACCGTCCTCCACGTCGACCCCAACCCTTTCTAC
GGCTCCTTCTACTCCTCCATGCCGCTCCCTTCCGTCCCCTCCTTCCTCTCCCCCGACTCC
TCCACCCCCTGCCCATCCTCCTCAACCACAGCCTCCTCGCCCGCCACCGCTGCATACACC
GCCGTCGATCTCGAGCGCCGCAGTTTGTAC

Homology of Contig U35_27787 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None