barSeed - Barley Seed Development Database

Probe CUST_29571_PI390587928

Source Contig U35_39767

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29571_PI390587928	Hv_44K_v2	GTAGTAACAGAGAAATGGGTTGTTTAGCAGCCAATAGATAGCATTGTTATTTGTGTCCAA	21	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.382	3.071	0.955	0.789	0.770	1.003
Raw	23.084	43.755	13.102	15.269	4.231	7.615

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_39767	739	3e-25	22 - 81	100	60 / 60	minus

Contig Sequence (739 bp)

>U35_39767 739 Hv_44K_v2
TTTTTCTAAAATTTTTTTTTTTTGGACACAAATAACAATGCTATCTATTGGCTGCTAAAC
AACCCATTTCTCTGTTACTACATCAAATGTCTACTTTCAATATTTCGAGGAATATAATAA
GTGCGGCCTGAAAGGTCAACATAGTACCTCGGGTTTTCAGGTTCTACTGAAAACGCATCA
GATATTTAGCAACGATTCCTATTCATGTTAATACTCCATCATTGCTATCTCCGACCAACA
TCCATAGAATCTAGCCCTGTCTCTAGCCCATCAGGACCTTCAAACGAACCGTTCCGCACC
GAGTTTTGGTGATGCATCGCTGTGGGTTGCACTTGTGTTCGCCCCTTCCGGGTTATGAAT
GTGCCGGGTGTATGCGTGAGGCCATAGACCATTTTCGTCAGATGGCAATGGAAAAAACTG
CAGGTAGCACAAAGAAGCAACGACCAGTCCCAGAACTCCACCAGTGCACACATCTTGCCA
ATGATGCCGGTAGTCGTCTACTCGAGAAATAGCCACTAAGGCTGCACCAAGCAGAGGGAG
AAAAATAATGCAGAGTTTTGCAACATGTCCTCTTCGATCAAAAACTTTGATTTTACCAGC
TAGATACCATGACAAGAACCCGAGACCAGCAAAAGACAAAGAGGTATGACCACTTGGGAA
ACTCTTATGACCTTCTTTGATATCACTCGCTTTACCATGACACAAGACGCCTGTAGTAAC
ATTGTCGTANGCAGGTACT

Homology of Contig U35_39767 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49820.1	323	2e-80	protein\|lipid phosphatase protein, putative, expressed
Brachypodium v1_2	Bradi2g47200.2	320	1e-82
Arabidopsis v10	AT1G15080.1	290	7e-55	\| Symbols: ATPAP2, ATLPP2, LPP2 \| lipid phosphate phosphatase 2 \| chr1:5188080-5189476 FORWARD LENGTH=290