barSeed - Barley Seed Development Database

Probe CUST_2956_PI390587928

Source Contig U35_23318

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2956_PI390587928	Hv_44K_v2	AGGCGTGTGCAGAGATGTCGCCTTGTTGCGCGCATGATAAGAATTGTTTGGATCAAAAAA	942	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55981.1	1095	9e-22	1008 - 1062	100	55 / 55	plus	ABC21143
Harvest35	U35_23318	1013	3e-25	943 - 1002	100	60 / 60	plus

Contig Sequence (1013 bp)

>U35_23318 1013 Hv_44K_v2
GCTCANCCGTCGCCACCGCCCCGCCGCAGATCGAGACGGTCCGTCCCGCCCGCGCGGCCC
CCCGTTGTCGGACCCCGAATCCCCAAATTCCCGATCAAATCTCCCCGCGGCCGGAGCCGA
TTCGATCGAATTCGAGCCCCGATCTGCGGCCACCGGGCAGGCGCTCCGTCGGAATCGGCT
CGAATTCGGGTGATCCGGAGGCGCATGGAGGGAGGCCCCGCGGATCCGAGCTAGGGTTAC
CGCCGGCGGTGATCTGGTGATGGTGCAGCGCGGCGCCGGGAGGACTCGGCCAGGAGGGAT
CGGCGGCTGGGAAGATGCGCGGCTATGCATGGGCGGCGCCAAGGCTGCGGCGGTGAGGGG
TGCGGCGACCGGTGTCCTTTCGTCCGGCACATGTGGCCGGCAACTCGCGTAGAGGCAGCT
CCACCACCGGCAAAGGGACCAGCCTCTCCTCCTCCTCATCCCCGCTCCTCCGTTCCTCCG
CTCCGGACGACCTCTTATCCACCCGCACCGACGACTCCCCCGGCAGCACCACACAAGCAG
GAGGTCGCCGATTCACCCCGTCCGCCCTCAGCAGACTCCTTCCTAAAGGTGCCTCATACT
TTGGTGGATATATCAATTTGGGATTTGCTAAGCTCCGCCAAATTTAGACCAAATTCAGTA
TGCTGCTGGAGTCATCAGATGGCTATCATTTCTGCTTCAAAAACTTAATCTATGGAAAGC
AACTAGAATTTGTTGCCTTGTTGAGAGGTTACCTTAGTCTCGCGTTCCTGCCAAGCTCCT
GGCTGAGTGTACATATACATCATCTGTGCCGGGCTGGTTGTGCGCTTGGTTTGGTAACGG
CTGAGCTATCATATCATTTAAACGGTACAACGAGGTTGTCTTTGTATGGTTGGATTGAAT
TCCTTGGCACCTCATTGTGAGAATTTTGGCACTCCACATGTAAGGCGTGTGCAGAGATGT
CGCCTTGTTGCGCGCATGATAAGAATTGTTTGGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23318 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None