barSeed - Barley Seed Development Database

Probe CUST_29561_PI390587928

Source Contig U35_27798

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29561_PI390587928	Hv_44K_v2	TGTAGCTGCCACATGACTCTTAACAGGACTCTGATCATGAAATTTGATTAGGGAGGTGCT	268	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.329	1.410	1.155	0.997	0.304	0.349
Raw	49.470	85.172	58.475	82.032	7.993	10.559

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29221.1	604	2e-24	268 - 327	100	60 / 60	plus	ABC25893
Harvest21	ABC25893	591	3e-25	264 - 323	100	60 / 60	minus	ABC25893
Harvest35	U35_27798	591	3e-25	269 - 328	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_27798 591 Hv_44K_v2
GTATATAGGAAAGAGGGCAATAATTGAAGCCATGAATGAAGTGTCAACATTCCTAAAGAT
ACTGACACATGTGGTGTCTGGCTTTTATAACACTGTACATGGTATAAAGATGGCCGCATG
CCTGTTCATGTTAACATATTCCACCCTGCCACTCGACAGATGAAGTGTAATTGGTGGGAT
TCAAATGTAACTCAAACACAGTGCTTTTAGTGCACCAGTCTTTTGTGAGTGTAATCTTGC
TGGGTGTCCAGGTTCTATCTGGAATTTGTGTAGCTGCCACATGACTCTTAACAGGACTCT
GATCATGAAATTTGATTAGGGAGGTGCTGTGGTTGCTATGTGTATTCTTCTCTATCTACA
ATAGGTAGAGTGCATATAGCCCCAGGTGTTGGGGTTACTCTACATGGAGCTCTTTATAGA
AGACAGAGAAAAGTTGCAGGTAGAATTATTTTCTTGTTCTTATCACATTTGTATTGTGAG
ATGTAGCTCAAATACGTTCAGGTAAAAGTTATATTTTATTGCTCTAGGTAGATGTAAATG
TTGTACGGTAGAAAAAATGTTGTACTCTGGTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None