barSeed - Barley Seed Development Database

Probe CUST_29556_PI390587928

Source Contig U35_39776

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29556_PI390587928	Hv_44K_v2	CGGAAGTCTACTCCAAGACCCAAGCAAATAAACATGGCTGAAGGGACCGTTGATGAATAT	396	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368554	3497	2e-24	2836 - 2895	100	60 / 60	plus	None
MLOC	MLOC_5739.1	3875	2e-24	892 - 951	100	60 / 60	minus	ABC39491
JLOC1	JLOC1_3708.2	3791	8e-25	2914 - 2973	100	60 / 60	plus
JLOC1	JLOC1_3708.1	2571	8e-25	1694 - 1753	100	60 / 60	plus
Harvest21	ABC35981	459	3e-25	397 - 456	100	60 / 60	plus
Harvest35	U35_39776	459	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (459 bp)

>U35_39776 459 Hv_44K_v2
GAGCTTGCCCTAGATATACTTGGGGGCCCCATCAGTTTTGATAATGAGGCACCAACTAAT
CGAAAGGGGGACCCTACATCTGTTGGTAAAGAAGGCACAGCTAAAAAGAGAACAAGGGGC
CCTGTGTCTGTCGGCAAGGAGGGAGCTGTCAAAAAGAAAATGAGGGGCTCTATCTCTATT
GGTGATGAGAGAGCAGTCAAAAACAGGATGAGGGGTTCAGTCTCTATTGACAATCAAGGC
AACACAATGAAAAGGAAGAGAGTATCAAGGAAGTCAGCCAAAGGCAATTCAACAATAGAT
GCTGGGGTGAACGCTTGTGAGTTGGACCTTCCAAGTATGCCCTCTGAAGCTTCTGCAGAA
AGAGGCATTGATACTGGAAACACGAACAAGATGAAGCGGAAGTCTACTCCAAGACCCAAG
CAAATAAACATGGCTGAAGGGACCGTTGATGAATATTCA

Homology of Contig U35_39776 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g58087.1	981	2e-57
Arabidopsis v10	None