barSeed - Barley Seed Development Database

Probe CUST_29550_PI390587928

Source Contig U35_39785

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29550_PI390587928	Hv_44K_v2	TTATCGACAATATGCAAGAGCAGCGGGTTTTGGTATTACCAAGCTCAAGAGGAAGCCGAT	371	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.830	1.994	1.194	0.759	0.456	0.458
Raw	46.547	47.273	26.204	23.422	4.670	5.549

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33258.3	2346	7e-23	689 - 748	98	59 / 60	plus	None
MLOC	MLOC_33258.4	2501	7e-23	679 - 738	98	59 / 60	plus	None
MLOC	MLOC_33258.1	1150	7e-23	702 - 761	98	59 / 60	plus	None
MLOC	MLOC_33258.2	2297	7e-23	702 - 761	98	59 / 60	plus	None
JLOC1	JLOC1_21570.3	2464	4e-23	586 - 645	98	59 / 60	plus
JLOC1	JLOC1_21570.2	2579	4e-23	684 - 743	98	59 / 60	plus
JLOC1	JLOC1_21570.1	2620	4e-23	698 - 757	98	59 / 60	plus
Harvest21	ABC35991	477	3e-25	372 - 431	100	60 / 60	plus
Harvest35	U35_39785	477	3e-25	372 - 431	100	60 / 60	plus

Contig Sequence (477 bp)

>U35_39785 477 Hv_44K_v2
GCGCACCCGGCGGTTTCCATATGGACTCCTCTCCAATTTCCGCCGGCGAGAATCCGAGGA
CAATGAGCCTTCTCCGGTAAGCTTTGTTCTTCTTGATCATGTGCCTCCTCCGGCATCTTT
CTCGACGCCAGACCATGGCGTTGGAACTTCGTCCGGCCGTGGCTCCGGTGATGACTCATT
GGTGCGTCATCCGGCAATGCACTCATCCTTGTTGACTCCGCCATGTACTGTTGAACCAAT
CGAGATGATGACGCCAGATCCCAGCGCCAGATACATACACGTGCCACATATGACCAGGAT
GGGCAAGTTCGTGAAGATTTTGTGCCGAAAACAAATATGGTTTTCGTTACTGAAGAGGAA
GGGTATGACTTTTATCGACAATATGCAAGAGCAGCGGGTTTTGGTATTACCAAGCTCAAG
AGGAAGCCGATGTCGCGTCTCTATGCATGCTCTCGGGAAGGTAATTCTACATTCTAC

Homology of Contig U35_39785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None