barSeed - Barley Seed Development Database

Probe CUST_29534_PI390587928

Source Contig U35_50105

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29534_PI390587928	Hv_44K_v2	TCCATATAATTTGTTCTCTAATACGTTATTTTATGGAAATTGCAGGCCCGATTCTTGCTG	370	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57586.4	1007	2e-24	390 - 449	100	60 / 60	plus	ABC08476
Harvest21	ABC52129	586	3e-25	371 - 430	100	60 / 60	plus
Harvest35	U35_50105	586	3e-25	371 - 430	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_50105 586 Hv_44K_v2
TCAAGAAGGCCACGAGGTGTTTGCCCAGTTGTTGCAAGCCCCACAGGAGGAAGCTGATTC
AATAATCAAGGAGCGCTTTCCTGTGCCTCGTTTGGTTGTGTGCGATCAATATGGTTCTCA
GGTTATTCTTTTCTATATAATCTATCAGTACACTCTTAGGATTATGGATCCGGTGCATGT
GTACTCGGCAGTGGTATTTGGGAGCAGTTCCTAAACCTGCAGTGACAGTAGCAACTGCAG
GGGATCCCGATACGATATAATTTCAAACAAATGCAACAATCCTGAACTGGAAGGTCAAAA
TTTGTGCCGAGAATTGCAATCAAGTCATCAGTGATCGTTTCGGAGTAAACTAAAAAAAAA
CATCAGCACTTCCATATAATTTGTTCTCTAATACGTTATTTTATGGAAATTGCAGGCCCG
ATTCTTGCTGGCAAAGCTGAACCCATCCGTGACATATGACTCCGACAATCCTCCGCCCCC
CGGNGGGGATATGATATTCACAGATGATGCGAGCTTCCAGGTCTTCATGGAGCATCTCCA
GCGGTTGGCAGTTCAGTAGATCGTGGGCGTGCAGTAATTTTGCACC

Homology of Contig U35_50105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None