barSeed - Barley Seed Development Database

Probe CUST_29531_PI390587928

Source Contig U35_50108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29531_PI390587928	Hv_44K_v2	TGGGCAGAGTAAACATGATAAGAAAGGTTGGTTTAGTAATTGGGGAAAGAGGGGTCAAAC	490	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.212	1.245	1.228	0.726	0.677	0.462
Raw	104.631	155.514	144.477	117.392	43.432	33.371

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353713	2492	7e-23	1440 - 1499	98	59 / 60	plus	ABC16722
MLOC	AK354295	2550	7e-23	1548 - 1607	98	59 / 60	plus	ABC16722
MLOC	MLOC_70152.1	3096	7e-23	997 - 1056	98	59 / 60	minus	None
JLOC1	JLOC1_46541.1	2272	4e-23	1610 - 1669	98	59 / 60	plus
Harvest21	ABC52133	553	3e-25	491 - 550	100	60 / 60	plus
Harvest35	U35_50108	553	3e-25	491 - 550	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_50108 553 Hv_44K_v2
ACCACAAGGATAAGGAGGTGATGAACGCGCTTGAAGGTGCTGGTGCGTCGGCCTCCGAGG
TAGAGGTCCAGCAGGAGGTCACGGCAATGTCACAGACGAATATCTTCCGTCCGGGGATAG
ACGTCACTCAAGCAGTACTGCTTCCACAGGTCACATGGCGGCGGCAGGAGAGGACAGAGG
CTGTTGGCTTGTGGAAGGCTAAGGTGTATGACATGCACCATGTTATGGTGAGTGTTAAGT
CAAGGAGGGTTCCTGGTGCGATGACGGATGAGGAATTCTTTTCAGCTTGCAATGAGAATG
ATACTGAGAGTGAGGGGTTCGATGATGTACTGACTGACGAGGAGAAGAGGCAGCTGGAAT
CTGCGCTTAAGATGGATTCTCCAGATGCTGGTGGTGAAAGCCAGTTCAACACCTTTGTAG
GTCCTAGACATAGTTGCTTTGAGCCAAGGGAGAGGGAAATACCAATTGAGGATTTGAGCA
TCTCTGGAAATGGGCAGAGTAAACATGATAAGAAAGGTTGGTTTAGTAATTGGGGAAAGA
GGGGTCAAACTGG

Homology of Contig U35_50108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g25460.1	657	4e-112	protein\|ankyrin repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g28990.1	655	5e-118
Arabidopsis v10	AT1G04780.1	664	3e-74	Ankyrin repeat family protein \| chr1:1340891-1342965 REVERSE LENGTH=664