barSeed - Barley Seed Development Database

Probe CUST_29528_PI390587928

Source Contig U35_50111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29528_PI390587928	Hv_44K_v2	AATATAATCGTGGCCCACGCTGCAAAATTGCTTTACGTGTCCTGGCAAACAAATATCTTA	523	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.035	1.091	1.175	1.185	0.469	0.441
Raw	44.866	66.014	70.888	111.822	15.781	15.941

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250721.1	1939	2e-24	951 - 1010	100	60 / 60	plus	None
MLOC	MLOC_57769.1	1567	2e-24	670 - 729	100	60 / 60	plus	None
MLOC	MLOC_57769.3	1921	2e-24	597 - 656	100	60 / 60	plus	None
MLOC	MLOC_57769.4	1801	2e-24	597 - 656	100	60 / 60	plus	None
MLOC	MLOC_57769.5	5362	2e-24	518 - 577	100	60 / 60	plus	None
MLOC	MLOC_57769.6	1795	2e-24	608 - 667	100	60 / 60	plus	None
MLOC	MLOC_57769.7	1915	2e-24	608 - 667	100	60 / 60	plus	None
MLOC	MLOC_57769.2	1447	2e-24	670 - 729	100	60 / 60	plus	None
JLOC1	JLOC1_37497.2	6997	8e-25	476 - 535	100	60 / 60	plus
JLOC1	JLOC1_37497.1	6994	8e-25	476 - 535	100	60 / 60	plus
Harvest21	ABC52136	586	3e-25	524 - 583	100	60 / 60	plus
Harvest35	U35_50111	586	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_50111 586 Hv_44K_v2
ATTTTGTAATTTATTTTGGGCGATTTGTTAACCTTTTTTTTTGTTTCAGGTAAATTATCG
AGTCTGGCGGACCTAAAAGATATACCATTTTCTGTTAAATATTACACACTTTCTAAAAAG
GACTTGGAAGATAATGGCTACCCACTCAGTTTACCAGGTTTTGTCCCTACGGTTGCAGCT
CCTTCAGGCTCTTCCCCATACGAAATCCTCGGACTTGATTGTGAGATGTGTGTGACAGCA
GCTGGATTTGAACTTACGAGAGTAACATTAGTCGATATTAAAGGAGAGGTGATACTGGAT
AAACTAGTCAAGCCTACCAATCCAATCACTGATTACAATACAAGGTTTAGTGGAATCACT
GCTGAGATGCTATCCGATGTGACAACAACCCTCCAGGAGATTCAGGAAGAGTTTGTTGGG
CTTGTGTACAAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGACCTTTTGGCATTA
CGGATATCTCATGACTTGGTCATTGATACTGCAGTTTTGTACAAATATAATCGTGGCCCA
CGCTGCAAAATTGCTTTACGTGTCCTGGCAAACAAATATCTTAGCC

Homology of Contig U35_50111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08740.2	372	8e-104	protein\|exonuclease, putative, expressed
Brachypodium v1_2	Bradi4g40790.1	559	4e-106
Arabidopsis v10	AT5G25800.1	567	3e-74	Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr5:8979761-8982724 REVERSE LENGTH=567