barSeed - Barley Seed Development Database

Probe CUST_29522_PI390587928

Source Contig U35_50121

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29522_PI390587928	Hv_44K_v2	GTTGTGCCTCTCTCCTATATCTATTTCAATGTTTTTTCATCGCAGACAAGGTTAAAGATA	565	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374811	1811	2e-24	528 - 587	100	60 / 60	plus	ABC35052
MLOC	MLOC_26048.2	1170	2e-24	462 - 521	100	60 / 60	plus	None
MLOC	MLOC_26048.3	1865	2e-24	1162 - 1221	100	60 / 60	plus	None
MLOC	MLOC_26048.1	900	2e-24	441 - 500	100	60 / 60	plus	None
MLOC	MLOC_26048.4	1094	2e-24	346 - 405	100	60 / 60	plus	None
MLOC	MLOC_26048.5	1917	2e-24	1162 - 1221	100	60 / 60	plus	None
MLOC	MLOC_26048.6	2001	2e-24	1162 - 1221	100	60 / 60	plus	None
JLOC1	JLOC1_17714.10	635	8e-25	346 - 405	100	60 / 60	plus
JLOC1	JLOC1_17714.9	1305	8e-25	462 - 521	100	60 / 60	plus
JLOC1	JLOC1_17714.4	1921	8e-25	1162 - 1221	100	60 / 60	plus
JLOC1	JLOC1_17714.1	1234	8e-25	391 - 450	100	60 / 60	plus
Harvest21	ABC52149	665	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_50121	665	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_41580	698	3e-25	440 - 499	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_50121 665 Hv_44K_v2
CAAAGCCCTCCCTCTCGCGACTGGCTCCTCTGGTGAAAACAATAGCTAGGGTTCCCTCAC
CGGCCGCCGCCGCCACAGGTGTCACACACGCTGCCTGCCAGTGCCCTCCCCGGCCGCCGT
CGTCCGTCTCACCGCCGCTCCATTCTCACCGGTGCCCAGAGCCGCTCCATTCTAACCGGT
CGGGACTCCCTCCGCTACCGCCAGTGCCCTCCCCGGCTGACGCAACTAGTGCAAAGCCGC
CGTCATCCCTCTGCACGACATGGCGACCCCACCGCTCCATTCTCGCCCCACCGCCGGTCG
GGAGGGTAGGCCACCCCACCGCTCCATTCTCGCCCACCGCCGGTCGGGCCTCTCTGCCTG
TCTCCGGTCGCCACCAGCGCCCGCCTTCCATTGGATAGGACTTGAATTTTGTAGTTGATT
GCCAATAGACTGCCAAACATGGTGATGTTTCTGGACAATTTAAGGGTCTTCGTCGTAGCC
ACGTCACCGAGTGCTTTTATTGCATCTAGCTNTGTGATCAAGAAGATTGGCCTGAAGAAA
GCTGGGGACATTGTGGTAAGAGCAGGTTGTGCCTCTCTCCTATATCTATTTCAATGTTTT
TTCATCGCAGACAAGGTTAAAGATAAATTTTTAATATTTCTACTGCTTTAATCCATTAAT
GATTA

Homology of Contig U35_50121 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None