barSeed - Barley Seed Development Database

Probe CUST_29521_PI390587928

Source Contig U35_50122

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29521_PI390587928	Hv_44K_v2	TTCTTCCATGAAAATGGGGCAAGAAAACATGGACCTTTTGCTCAATCGGTCGTGGCTTGT	431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64798.1	1846	2e-24	924 - 983	100	60 / 60	minus	ABC11481
MLOC	MLOC_64798.3	1664	2e-24	742 - 801	100	60 / 60	minus	ABC11481
MLOC	MLOC_64798.4	1512	2e-24	516 - 575	100	60 / 60	minus	ABC11481
JLOC1	JLOC1_42586.1	1536	8e-25	746 - 805	100	60 / 60	plus
Harvest21	ABC52152	604	3e-25	432 - 491	100	60 / 60	plus
Harvest21	ABC11482	622	3e-25	489 - 548	100	60 / 60	plus
Harvest35	U35_50122	604	3e-25	432 - 491	100	60 / 60	plus
Harvest35	U35_4995	676	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_50122 604 Hv_44K_v2
GCGACACGCGTAGGTGGACGGAACGGAACCGGTCGCTTGTTGTGCGGGGCATGGGGCTCC
TCGACCAGCTCTGGGACGAGACGGTCGCCGGCCCGCGGCCGGACCACGGCCTCGGCAGGC
TCCGCAGGTATTCCTCCTTCTCGCCCTCGACCGCGGTGGCAGCGGATGTCGCGCCCAAGG
TGACCCGCAGCATCACCATCGCCCGGCCGCCGTCTCTCTCGGTCCCGTCCGGCGAGTCAA
GCTCCGTGCCGTCGTCTCCGGCCAGCGCGCCGGAGTCCCCGTTCGCAGCAGGTGGGCTTC
CTCCTCCTCTGTTTCTTGGCCTCTCCTTGTGATTCCAGTCTTTAGTTAGGATCGGTCTGT
GGCTCTGTGTAGCTCAGAGCCGCTGATCGAAGCTCGTCGCTTTTATATATTGGATCCGCG
ATCTGTCGTCCTTCTTCCATGAAAATGGGGCAAGAAAACATGGACCTTTTGCTCAATCGG
TCGTGGCTTGTCCCTCGATGCTCGAGTTTGATTTAGCTACAGAATCAGATCTGTGAGCAG
AGCACTGTCGCAGACGCAGAGATGTCGGGGAATCTGCTGTTTAACCTGAAATTCCTCCTC
ATTA

Homology of Contig U35_50122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None