barSeed - Barley Seed Development Database

Probe CUST_29520_PI390587928

Source Contig U35_50123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29520_PI390587928	Hv_44K_v2	CAAAGAATGAAAAACAGGCAGCAGAGATTGAATCTCTTAAGGAACAGCTCGCAGCAAGGG	565	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376059	1691	2e-24	506 - 565	100	60 / 60	plus	ABC29910
MLOC	MLOC_15700.1	1433	2e-24	825 - 884	100	60 / 60	minus	None
MLOC	MLOC_15700.2	1492	2e-24	825 - 884	100	60 / 60	minus	None
JLOC1	JLOC1_10786.3	1614	8e-25	652 - 711	100	60 / 60	plus
JLOC1	JLOC1_10786.2	1548	8e-25	586 - 645	100	60 / 60	plus
JLOC1	JLOC1_10786.1	2174	8e-25	1212 - 1271	100	60 / 60	plus
Harvest21	ABC52153	648	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_50123	648	3e-25	566 - 625	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_50123 648 Hv_44K_v2
CCCTCGCTGCCCACTAGTGGAGTAGTATCTCTACCCCCGCTCTTTGCTTGCCTCAGACGC
TGCTTGCCATTAACCCCCTGCCCACACCCCCCGCATTTACCAATCCATCCAGGAAAACGA
AGAAAGCAAGTAACCCCAAAGCTCTCTAGTCTTTGCCGTGAGGAATCGACAGAGATACTC
GATTCCATCCGATCTGTTAAGGGGGCGCTGTTGCATCCAACAAATAGGTTTTACTTCTCC
TGCCGAGGCTATATGGCTGAGAATGAGACAGGAGGCGCACATCATTTGCCTGCAAGCTCT
GATGTGTTGGCTTCTAATCTTCACTCCAGGGTGGAGTTCCACAAGAATGCCTACTTGGAC
TACGTTAGGATCAGTGATGCGCTTCACTGTGTCATGGAGGAAAAAGCAAAGCTTCAGCTA
GAACAGAATACGACGGGGCAACTGGTCGCTGAAAAGGACAAACTGATCACTGAGAAGGGC
AAGCTGGTCGCTGAAAAGGACAAACTGATCACTGAAAAGGACAACCTGGTCGCTGAAAAG
GACAAACTGATCGCTGAACTGAAAACAAAGAATGAAAAACAGGCAGCAGAGATTGAATCT
CTTAAGGAACAGCTCGCAGCAAGGGAGTCGAGCAATCCACTACTGGCA

Homology of Contig U35_50123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None