barSeed - Barley Seed Development Database

Probe CUST_29514_PI390587928

Source Contig U35_50133

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29514_PI390587928	Hv_44K_v2	TCTCCAAAGGTTGGAGAAAGCTGAAAAGGCTGCTCAACTAGAAAAGAGTATTGAAAGTGA	512	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20551.2	501	2e-24	117 - 176	100	60 / 60	minus	ABC11496
MLOC	MLOC_20551.1	707	2e-24	351 - 410	100	60 / 60	minus	ABC11496
Harvest21	ABC52164	588	3e-25	513 - 572	100	60 / 60	plus
Harvest35	U35_50133	588	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_50133 588 Hv_44K_v2
CCGCCTCCCTCTCCCTGCCACGTTCGCTCTAGCCTCCACCAGGCTGCTCGACTGCTGCGT
CTTGCTGCATCATCGCTGTCCAAGATGAGCGACGAGGTGATATGGCACTGCCTCCGCCAC
AACCACTGCAGCTTCATGGCCAAGATCGAGACGGGGCTATTCTGCCGGAACCCCTACAAC
GCCACAGGCATTTGCAACCGGAGCTCCTGCCCCCTCGCCAACAGCCGCTACGCCACCATC
CGGGACCACGACGGTATTTTCTACTTATACATGAAAACTGCGGAAAGAGCTCATCTGCCA
AACAAATTATGGGAGAGAGTCAAACTGCCCAGGAATTATGAGAAAGCAATGGAAGTCATC
GAAAAGCATCTCGAACATTGGCCGAAGCTACTTGTGCACAAGATCAAACAGCGCCTTACA
AAAATGACTCAGTATCGGATAAGGATGAGGAAACTTCAGCTTAAAGTGAGAGAGAAGATA
ATGACAGTCCCCAGAAAGAAGACTCAGCGTGATCTCCAAAGGTTGGAGAAAGCTGAAAAG
GCTGCTCAACTAGAAAAGAGTATTGAAAGTGAACTAATAGAACGTTTG

Homology of Contig U35_50133 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16950.4	291	4e-111	protein\|Mak16 protein domain containing protein, expressed
Brachypodium v1_2	Bradi2g14350.1	288	2e-114
Arabidopsis v10	AT1G23280.1	303	7e-92	MAK16 protein-related \| chr1:8260865-8262650 REVERSE LENGTH=303