barSeed - Barley Seed Development Database

Probe CUST_294_PI415269222

Source Contig TA39232_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_294_PI415269222	Hv_44K_v2	CCGTGGCATGGATCATACTTTGTATACTTGTATTAATTGTACAGTAGACAATCTTTTGAC	1796	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55033.1	3265	2e-24	3147 - 3206	100	60 / 60	plus	ABC09078
JLOC1	JLOC1_35467.1	3411	8e-25	3147 - 3206	100	60 / 60	plus
Harvest21	ABC09078	1873	3e-25	1788 - 1847	100	60 / 60	plus	ABC09078
Harvest35	U35_18214	1884	3e-25	1788 - 1847	100	60 / 60	plus

Contig Sequence (1865 bp)

>TA39232_4513 1865 Hv_44K_v2
CGGCACGAGGCAGAAAATGAAAGGCAACGTAAATATTTTGATGATGAAATTGAACGAATA
ACAGCAGAAGCGCAATACCGTGTTGCTGAGGCTGAAAAGGAATGCAAAATTTCTTTAGAG
AATGAGAAAATGAAGTACCATCAAGAATACTTGGACTCTATAAAGATACTAGAAGAGAAG
TGGAAAGTACACCAACAATCACCCAAGAAACAGATTAAAGAACCCGAGCCTACATCAAAT
GGTGACGTGCAGGACTTACTGCAGAATGAGAAAATGTTACGCCAATCTGCTGAAGATGAG
TCCAATGACCTTAAGAATCAACTATCGCACTGGAAAAAGATGGAGGCCACAGCTACTGCT
GAAGTAGTGAGACTCCGGAGAATGTTGGATACTGAAGCTAGCCAAAAAGACAAACTCGAA
GAAGAAATAGCTGTTTTGAAAAGTCAGTTAATGCAGTTAAGTCTGGATGCTGATGAGACA
AGAATGAGCCTTGACACAGGAGATGGACCAGGAAAAATATTTCCTGGTTTAGATTCTTTG
ATGTCTCACTCTCGGAATTCGCAGCCTAGAGAGCAGAGCAATGGACCTAAGGCGCCAGTC
GCTAAACTCTTTGAGCAAGTTGGGTTACAGAAGATATTGTCATTACTTGAGTCGGAAGAA
CCTGATGTTCGTGTTCATGCCGTGAAAGTTGTCGCGAATCTGGCAGCTGAAGAGGCAAAT
CAAGAAAAGATTGTGGAAGCAGGTGGCCTCACTTCCCTCCTAATGCTGCTTAGGAGCTCT
GAGGATGAGACCATACGCCGAGTAGCAGCAGGAGCAATTGCTAATCTTGCAATGAATGAA
ACGAACCAAGATCTTATAATGGCTCAAGGTGGTGTAACCTTGTTGTCAATGACAGCATCT
GATGCAGAGGACCCACAAACTCTAAGAATGGTGGCTGGAGCTATTGCTAACCTGTGTGGC
AATGACAAACTGCAAACTCGTTTAAGAGGAGAAGGTGGAATTAAAGCATTGCTGGGAATG
GTTAAGTGTGGCCATCCTGATGTCCTCGCTCAAATTGCTCGTGGCATTGCAAACTTTGCA
AAATGTGAATCTAGAGCAGCTACTCAAGGTAACAAGGTGGGGAGATCATTATTGGTGGAT
GACGGGGCACTTCCTTGGATAGTAAAAAACGCGAATAATGAGGCTGCCCCAATTAGGCGG
CACATCGAGCTTGCACTCTGCCACTTGGCGCAACATGAGGTAAATGCCAAGGATATCGTG
AGTGAAGGCGCGCTCTGGGAACTTGTTCGGATCTCGAGGGATTGTTCTCGGGAAGATATA
AGGATGTTGGCATACCGCACGCTGACATCCAGCCCAACTCTTCAATCGGAGATGAGGAGA
TTGCGGATAGAGTGTTGATGAATCAACATAAAAGGATGCAAGTGTGCCTCATCCTCACAC
CGTGTGGACTTATGTTTCTCGCCCAAATCTCCCAAGTTTAGTAGAGGCGCTGCTGGTGGG
CAAGCACTGGTAATCAGGCGCGTCGGCCCTTGATATGCCCAGCTTCTGCAAGCAAGCAAG
CAAGCATACATGGCCAGGCCGGGCAGCGGACCCGTTGAGTTTGGTCTGCGCCATCATTCT
CCCCAAGATGATTCATTTTGTTTATGGCTGGGATTCGTTTTTCAAATCCTAGCGTGTGAG
AGCTTTACTTACCTGGATGTAACCTGTAGGAGAATCTGTGTTGTAAAATCCACGAGCATG
GTCGGGATATGTGCAGCTGAGTGGCTTGCAGTGCAGATAGGTTGGCTTGGGTTGGGCCGT
GGCATGGATCATACTTTGTATACTTGTATTAATTGTACAGTAGACAATCTTTTGACTGTA
ACTTT

Homology of Contig TA39232_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g04560.1	892	protein\|kinesin motor domain containing protein, expressed
Brachypodium v1_2	Bradi1g51507.2	899
Arabidopsis v10	AT1G12430.2	920	\| Symbols: ARK3 \| armadillo repeat kinesin 3 \| chr1:4234122-4238552 REVERSE LENGTH=920