barSeed - Barley Seed Development Database

Probe CUST_2948_PI390587928

Source Contig U35_473

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2948_PI390587928	Hv_44K_v2	TTATTGTTTTGTCTTGAGTGGTCGGGGTTATGCCGTGCGAGTAAAGTTCGTGGAACATCA	2153	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.574	1.141	1.111	0.716	0.325	0.245
Raw	118925.333	125787.533	116930.800	116125.233	18946.667	15694.153

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250148.1	2398	2e-24	2148 - 2207	100	60 / 60	plus	ABC00319 ABC00326 ABC00873 ABC00998 ABC48264
MLOC	MLOC_53941.1	4154	7e-23	192 - 252	98	60 / 61	minus	ABC00319 ABC00326 ABC00873 ABC00998 ABC39277 ABC48264
JLOC1	JLOC1_34691.1	2570	4e-23	2303 - 2363	98	60 / 61	plus
Harvest21	ABC00681	2288	3e-25	2165 - 2224	100	60 / 60	plus
Harvest21	ABC00999	805	1e-23	54 - 114	98	60 / 61	minus
Harvest21	ABC00029	436	1e-23	320 - 380	98	60 / 61	plus
Harvest35	U35_473	2304	3e-25	2154 - 2213	100	60 / 60	plus
Harvest35	U35_143	558	1e-23	445 - 505	98	60 / 61	plus

Contig Sequence (2304 bp)

>U35_473 2304 Hv_44K_v2
CCCCTTCAAACCCTAGTCCTCCTCCCCACCCCGCTCCTCAGCCCGCCGCCGCTCCGCCCT
CCACCGGAAGAAAAACCCTAGCCAGATAGCTTCGAGCTTCCCCGGAGCGCGCGAGAGAGA
TGGCGGCGAAGGGCGACGGGCCGGCCATCGGCATCGACCTCGGCACGACCTACTCGTGCG
TCGGCGTGTGGCAGCACGACAGGGTCGAGATCATCGCCAATGACCAGGGCAACCGCACCA
CGCCGTCGTACGTCGCCTTCACCGACTCGGAGCGCCTCATCGGCGACGCCGCCAAGAACC
AGGTGGCGATGAACCCCATCAACACCGTCTTCGATGCCAAGCGTCTCATTGGCCGGAGAT
TCACCGATTCTACTGTCCAGAGTGATATTAAGCTGTGGCCATTCAAGGTTGTTGCTGGAC
CTGGTGACAAACCCATGATCAATGTCCAGTACAAGGGTGAGGAGAAGCAGTTTGCAGCTG
AGGAGATCTCTTCTATGGTCCTCATTAAGATGCGTGAGATTGCAGAAGCTTTCCTTGGCA
CCACTGTGAAGAATGCTGTTGTAACTGTACCTGCATACTTCAATGATTCTCAGAGGCAGG
CTACCAAGGATGCTGGTGTCATTGCTGGCATCAATGTCCTCCGTATCATCAACGAGCCAA
CAGCTGCTGCCATTGCTTATGGTCTTGACAAGAAGGCTTCCAGTGTTGGTGAGAAGAATG
TCCTCATCTTTGACCTTGGAGGTGGTACCTTTGATGTGTCTCTTCTCACCATTGAGGAGG
GTATCTTTGAGGTCAAGGCCACAGCTGGTGACACTCATCTTGGTGGTGAGGACTTTGACA
ACAGGATGGTCAACCACTTTGTCCAGGAGTTTAAGAGGAAGAACAAGAAGGACATCAGTG
GCAACCCAAGAGCTCTTCGGAGGCTGAGGACATCCTGTGAGAGGGCAAAAAGAACTCTCT
CCTCCACTGCCCAGACCACCATCGAGATTGACTCGCTGTTTGAGGGCATAGACTTCTACT
CCACCATCACCCGTGCCCGGTTTGAGGAGATGAACATGGATCTCTTCAGGAAGTGTATGG
AGCCTGTGGAGAAGTGTCTGAGGGATGCAAAGATGGACAAGAGCACCGTGCATGATGTTG
TCCTTGTTGGAGGTTCCACTAGGATTCCTAGAGTGCAGCAGCTTCTGCAGGACTTCTTCA
ACGGCAAGGAGCTATGCAAGAGCATCAACCCTGATGAGGCTGTTGCCTACGGAGCTGCTG
TCCAGGCTGCCATCTTGAGCGGAGAGGGCAACGAGAAGGTCCAGGACCTGCTGCTGTTGG
ATGTCACTCCTCTTTCCCTTGGTCTGGAGACAGCCGGGGGTGTGATGACGGTCTTGATCC
CAAGGAACACCACCATCCCCACCAAGAAGGAGCAGGTCTTCTCCACCTACTCGGACAACC
AGCCTGGTGTGCTCATCCAGGTGTACGAGGGTGAGAGGACCAGGACCCGTGACAACAACC
TCCTAGGCAAGTTCGAGCTGTCCGGCATCCCTCCTGCACCGAGGGGAGTTCCCCAGATCA
CGGTCTGCTTTGACATTGACGCCAATGGCATCCTGAACGTGTCTGCTGAGGACAAGACCA
CCGGGCAGAAGAACAAGATCACCATCACCAATGACAAGGGCAGGCTGAGCAAGGAAGAGA
TTGAGAAGATGGTCCAGGAGGCTGAGAAGTACAAATCTGAGGACGAGGAGCACAAGAAGA
AGGTGGAGTCCAAGAACGCCCTGGAGAACTACTCTTACAACATGCGCAACACAATCAAGG
ATGAGAAGATCGCCTCCAAGCTGCCGGCGGACGACAAGAAGAAGATCGAGGAGGCCATCG
ATGCCGCCATTCAGTGGCTGGACGCGAACCAGCTTGCTGAGGCGGACGAGTTTGAGGACA
AGATGAAGGAGCTGGAGGCCCTGTGCAACCCCATCATTGCTAAGATGTACCAGGGTGCTG
GCGCCGACATGGAGGGCGGCATGGACGACGACACCCCGGCTGCTTCTGGCGGTGCTGGCC
CCAAGATTGAGGAGGTTGACTAAACAAGTCGATTTCTGTTGCAGAGGCAGGCAAAGCCTG
CTGCTTAGTTATTATGTCGTGTCCTATCGTTATCTGAGACTTGGTTGTGGTGGTTATTGT
TTTGTCTTGAGTGGTCGGGGTTATGCCGTGCGAGTAAAGTTCGTGGAACATCAGTGTTGT
CACGTCTAAGTAATATATTATTCTAAATCAAAAAAAAAAAAAAAAATCATCTGGAGCTTT
TGGGCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g47760.1	650	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi4g04220.1	649
Arabidopsis v10	AT5G02500.1	651	\| Symbols: HSC70-1, HSP70-1, AT-HSC70-1, HSC70 \| heat shock cognate protein 70-1 \| chr5:554055-556334 REVERSE LENGTH=651