barSeed - Barley Seed Development Database

Probe CUST_29479_PI390587928

Source Contig U35_45744

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29479_PI390587928	Hv_44K_v2	TCTGCGATCCATATCCATCGTCGCCATGCTGTCTTCCCACTGCGAGAGCATGCTGGCTTA	67	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72002.1	1342	2e-24	1150 - 1209	100	60 / 60	minus	ABC44969
JLOC1	JLOC1_47890.1	1417	8e-25	1202 - 1261	100	60 / 60	minus
Harvest21	ABC44968	438	3e-25	68 - 127	100	60 / 60	plus
Harvest35	U35_45744	438	3e-25	68 - 127	100	60 / 60	plus

Contig Sequence (438 bp)

>U35_45744 438 Hv_44K_v2
CAAATCCTCTCACATCACCGCATTCCTACATTCCCCCAGCTCTCCTGCTTGCGGATCTCC
TCCTCGATCTGCGATCCATATCCATCGTCGCCATGCTGTCTTCCCACTGCGAGAGCATGC
TGGCTTACGCCGCCGCCGCCGCCGGACGGCGCGCCATGCTGGTCGACCCCCGGCGGTACC
GGCCGAACGTCGAGGTGGCGCCCAACTGCCCTCGCTGCGACTCGCCCAACACCAAGTTCT
GCTACTACAACAACTACAGCCTCAGCCAGCCGCGCTACTTCTGCAAGGGTTGCCGCCGGT
ATTGGACCAAGGGCGGATCCCTCCGGAACGTGCCCGTCGGCGGCGGCTGCCGCAAGAACC
GGCGGGGCAAGCCGGTGCGGCCCTTGGCCGACACGGCCTCCGAGAACCACGGCGCAGCAG
CGTTCTCTCACCAGTTCC

Homology of Contig U35_45744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g36900.1	328	3e-54	protein\|dof zinc finger domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g24040.1	328	8e-58
Arabidopsis v10	None