barSeed - Barley Seed Development Database

Probe CUST_29472_PI390587928

Source Contig U35_21791

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29472_PI390587928	Hv_44K_v2	GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT	0	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.489	5.519	1.084	0.750	0.708	0.688
Raw	4794.357	5082.303	949.155	1063.661	326.563	366.095

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15558.2	941	2e-24	881 - 940	100	60 / 60	minus	None
JLOC1	JLOC1_10682.1	1296	8e-25	1223 - 1282	100	60 / 60	minus
Harvest35	U35_21791	564	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (564 bp)

>U35_21791 564 Hv_44K_v2
AATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTC
GGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACA
GAAAGACCCTATGAAGCTTTACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGC
TTAGGTGGAAGGCGAAGAAGGCCCCCTTCCGGGGGGGCCCGAGCCATCAGTGAGATACCA
CTCTGGAAGAGCTCGGATTCTAACCTTGTGTCAGACCCGCGGGCCAAGGGACAGTCTCAG
GTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTC
CTCGGGCCAGACGGACATTGGTCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGA
CTCACCCGTCGAGCAGAGACGGAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGG
GCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAGAGTCC
ACATCGACGGGAAGGTTTGGCACC

Homology of Contig U35_21791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None