- Probe CUST_29470_PI390587928
- Source Contig U35_21793
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29470_PI390587928 | Hv_44K_v2 | AAGGTAATGCATGCCCAGGAAGAATTACGGTCAATCCGTGCTAAAATAGCAGTATTGGAA | 615 | GeneList: brown MasterList: Starch_synthesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.792 | 2.552 | 1.271 | 0.727 | 0.463 | 0.412 |
| Raw | 26.932 | 60.334 | 26.096 | 21.898 | 3.272 | 2.781 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373583 | 2283 | 2e-24 | 1496 - 1555 | 100 | 60 / 60 | plus | ABC43347 |
| MLOC | MLOC_52290.2 | 2073 | 2e-24 | 666 - 725 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_52290.1 | 2405 | 2e-24 | 998 - 1057 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_33493.2 | 1550 | 8e-25 | 999 - 1058 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33493.1 | 1550 | 8e-25 | 999 - 1058 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16626 | 678 | 3e-25 | 616 - 675 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_21793 | 678 | 3e-25 | 616 - 675 | 100 | 60 / 60 | plus |
Contig Sequence (678 bp)
>U35_21793 678 Hv_44K_v2 AGGGAGGCAGGGTCTGGGGCAGGCCTGGAGGGGATGCTCACCAGGCTGCGGAGAGAGAGG GAGCGTGCGCGGCCACCGCCACACAGCAAGAATCAAGCAGGACGGCAAGGTCAAAATGGC GCTTTAATGAACCATAATGGAGCTCCTGGTCGAAGTCCAACTGATGGCATTTACACTCGA AGGGTACCGGATAATGGAAATATACGTAGCTCTTATTCTCAAAATGGAATACTAGAGGAC AATAAACCAAGTACTTCGGCCAAGGATGCATGGCGAACATGGTCTCTTGACAACAGTCGG TTTTCTGATTTTCAAGCCGCTGAGATCGATCCTTGGAGCAGAGAACTACCGAAACGTGTT GACCTGGACACTGTGTTAATGCAAGACGATGTTCCCGGACCATCTAATGGTGTGGCTATA AATGGTTATTCTAGTGATCATGTAGACTCTGGAAGGGATGAGATACATGCACGTCTTCAA AATTTGGAATTGGATCTTACAGATGCTCTTAAGACATTAAAATCAAGATTCGATGGTGTT TCATTAGATATGTCAAATGGCGAAACAGCAGATGTGGTAAATGGGCTCTCTGATGATTGG GAATTTGAAGAGACAAAGGTAATGCATGCCCAGGAAGAATTACGGTCAATCCGTGCTAAA ATAGCAGTATTGGAAGGC
Homology of Contig U35_21793 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g48170.1 | 530 | 2e-73 | protein|5-AMP-activated protein kinase-related, putative, expressed |
| Brachypodium v1_2 | Bradi1g12200.1 | 439 | 4e-90 | |
| Arabidopsis v10 | None |