barSeed - Barley Seed Development Database

Probe CUST_29469_PI390587928

Source Contig U35_21794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29469_PI390587928	Hv_44K_v2	GTAAATAACACGCTTCCTCGCCATGTGTGTTTAATTAAGAAGAAAAGAATTGCCTAGTTA	871	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.422	1.704	0.958	0.884	0.472	0.565
Raw	269.497	496.740	250.726	366.290	67.015	88.395

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367321	2305	6e-24	2247 - 2305	100	59 / 59	plus	ABC16219
MLOC	MLOC_2576.1	780	3e-22	725 - 780	100	56 / 56	plus	ABC16219
JLOC1	JLOC1_1535.1	796	8e-25	725 - 784	100	60 / 60	plus
Harvest21	ABC16219	991	3e-25	916 - 975	100	60 / 60	plus	ABC16219
Harvest35	U35_21794	947	3e-25	872 - 931	100	60 / 60	plus

Contig Sequence (947 bp)

>U35_21794 947 Hv_44K_v2
GGAGTCCTTAAACCTGGATTCATGCAAGATCGGAGATGAAGGTCTACTACATCTGAAGGG
CCTTGTGTTATTGAAAAGCTTGGAGCTTTCTGACACAGCAATTGGAAGCAACGGGCTCCA
GCATCTTTCTGGTCTTCGGAATTTGCACAGCATAAATCTCTCATTTACATTGGTGACAGA
CACTGGCATGAAGAAGATATCCACGTTGAATTCACTGAAGTCAGTTAATCTTGACAATCG
GCTGATAACTGATGTTGGCTTAGCAGCACTCATAGGTCTTACTGGGTTGACTCATCTTGA
CCTTTTTGGAGCTCGGGTGACTGACCATGGGACAAGCTTCTTGAGATATTTTAAGAATCT
CGAGTCCCTTGAAGTATGCGGCGGGTCAATCACTGATGCTGGGGTGAAGAATATCAAGGA
CCTCAAAGCTCTAACGCTCCTCAACCTTTCGCAAAATGCTAAGTTGACAGACAAAACACT
GGAACTGATTTCTGGCTTGACAGCTTTGGTCTCCTTGAATGTCTCCAACTCTCGGGTGTC
CAACGCCGGTCTCCGTCACCTGAAGGCGCTGCAGAACTTGCGCTCGCTGACACTGGATTC
GTGCAGGGTGACAGTCAATGAGATGAAGAAGCTCAGGGCAACGGCCCTCCCCAATCTGAT
AAGTGTTCGGCCTGAGTAGTCTCCATGGAGCGGACGCGACTGAGCGTCTGATCGGGCCCC
AAGACCGTGGTTCCGCAGACCCGTGCCCTAGTTTTTTCTCTGTTGTTTACGCAGTTTTTC
TCTCTACTGTTAAGTTCCGAGTGACGAAAAACACGACTCTATCCTATTTCTTCCCTTCTT
CTAATGCCGAATCAGGGGCAGGGACAAAATTGTAAATAACACGCTTCCTCGCCATGTGTG
TTTAATTAAGAAGAAAAGAATTGCCTAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39970.1	583	1e-91	protein\|regulatory subunit, putative, expressed
Brachypodium v1_2	Bradi3g48630.1	583	3e-90
Arabidopsis v10	AT1G15740.1	585	3e-76	Leucine-rich repeat family protein \| chr1:5411509-5414544 FORWARD LENGTH=585