barSeed - Barley Seed Development Database

Probe CUST_29462_PI390587928

Source Contig U35_19481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29462_PI390587928	Hv_44K_v2	TGGTTTGTGTTCGGTTTTCGGCATTGCAGAACTATTTGGAGATGCATTTATGCCAAAAAA	791	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15442.3	4008	3e-21	7 - 60	100	54 / 54	minus	ABC12223
MLOC	MLOC_15442.2	2785	3e-21	11 - 64	100	54 / 54	minus	ABC12223
JLOC1	JLOC1_10595.1	4069	2e-21	98 - 151	100	54 / 54	minus
Harvest35	U35_19481	862	3e-25	792 - 851	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_19481 862 Hv_44K_v2
GACATTTAAGATCCGCAACTGGAGGATCAAGTATGATTCAAATGACGCATTCTCTCATTT
AGTAGAAACCAGCCAAGTTAATGGCCAATGTTTCGAAATTTACCCGCGAGTAGGTGAAAT
TTGGGCCATTTACAACAACTGGGCACCCGACTGGGTTCCTTCCAGCGATGATGCGTGTGA
ATATGCCATCGGTGAGATTACTGAGCGGACTGAAGCTAGCACAAAGTTCTCGTTTCTGAC
TCCAGTAGACGGTTACACAGCTGTGTTCAGGTTTGACAAAGAAAGGGGTATTCTGGAGAT
TCCTGCAAATGAGAACTTGAGGTTTTCGCACCATATACCTTCTTACCGTCTGACAGAAGA
AAAAGGTGACACGCTTCGTGGCTTCTATGAGCTAGATCCAGCTTCTGTTCCTGATGCTTT
CCTGGTCCGTGGCGGCACCTGCTGACCGACCGACTTGGAAGCTGACATTGAATTACTTCC
AATCAAGTTAAGTAGTCATCTGGTCGCTACCGTGATCTGGTTATCAATCACTATGAAAAT
GTTATCTGCAGGGGAGAGCAAATTCTCAGTTAGGCTCTCTGTATTTCTAGATGTTTTACC
GTACTTCTAGTGCTTGGGCGTATTTTGGCCATTTCTGTTGTGGACCTTATGAAAGCTAGT
TGTGGGACCTTATGAAAGCTAGTTGTGGAACTTATGAAAGACTAGGAAGAAAAGGAACCT
GATAGTTGTTAGTTTGGAGCAGGATTCTGCTTATCGTTGTGTTGTGTGCTATCTGCGTGC
ATGCATTATTCTGGTTTGTGTTCGGTTTTCGGCATTGCAGAACTATTTGGAGATGCATTT
ATGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g27740.2	1009	4e-63	protein\|dnaJ domain containing protein, expressed
Brachypodium v1_2	Bradi2g13157.1	1063	2e-76
Arabidopsis v10	None