barSeed - Barley Seed Development Database

Probe CUST_29461_PI390587928

Source Contig U35_19482

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29461_PI390587928	Hv_44K_v2	GAATTATTCTGCTGACATGTCATGTGACCTATATCTACCACATGCGTTAGGTTTTGTAAA	1088	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.688	1.548	1.067	0.819	0.405	0.404
Raw	1400.437	2007.538	1220.961	1487.728	254.375	276.438

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38493.1	1241	6e-21	1138 - 1196	97	57 / 59	plus
Harvest21	ABC11061	1159	3e-25	1089 - 1148	100	60 / 60	plus	ABC11061
Harvest35	U35_19482	1159	3e-25	1089 - 1148	100	60 / 60	plus

Contig Sequence (1159 bp)

>U35_19482 1159 Hv_44K_v2
CCATTGCTCCGCGATGAGACCCGCAGCAACAGCGGTAGCAGCCACCGCCGCCGCGCTCCG
AGCCGCGTTCCTCGCCCCTCCCGCTGCCGCCTACCGCCTCCCCCCTCCCCGCCGTGTCTT
CCTCCTACCCCTGCACCGTCTCTCCTCCTCTTCGTCCACGGCCGCCCCGCCTTGCGCTGC
TTCCTCCGACTCCCAGCCGCCGCCGTTGCCTGCCTTCATGGACGCGCAGTTCGAGTCCTT
CCGGTCGCAGCTCGATGGCTCCTCCGCCCTCCGCGACCGCATCCGCGCCGTCGTCTCCGA
GGTCGAGTCGGCCTCCCGGGCCGCCTCCGCTGCGCTCCTCCTCATCCACCAGCCCGTCCC
GCTTTCTGATGTGCTCGGCAAGGCGAAGGCGCAGGTGGAGGTGATCAAGGGGCTGTACTC
TCAGCTCGCGGAGATCCTCAAAGAGTGCCCCGGTCAGTACTACAGGTACCATGGGGACTG
GAAGAGTGAGACACAGTCTGTGGTGTCGATGCTAGCATTCACAAATTGGCTTGAGACTGG
TGGCCTGCTCACGCACGCTGAGGCCCAGGAAAAGCTAGGATTGGGTTCTGGAGAGTTTGG
CCTGGACGTTGAAGACTACCTGACTGGGTTGTGCTTCATGTCCAATGATTTTCCTAGATA
CGTAGTGAATCGGGTCACGGCAGGTGACTATGACTGTCCACGGAAGGTGCTAAGCTTTTT
GACTGATCTGCATGCTTCATTTAGGATGCTGAATCTGCGCAATGACTTCTTGCGTAAGAA
ATTTGATGGGATGAAGTATGATTTGAGAAGGGTGGAGGAAGTATTTTATGATGTGAAGAT
ACGCGGACTTGTGCCTGGGGAGTCAAAGCAAGAGGTTGCTCAGTCATAGACGGTGAGCGG
TGCCTTGCCATTTACTTGTGCCTGGCAATCGACAGCTGTCATGTGTTGTCCTCGCTACCA
ATGAAATTTATGTTGGACGGATGGTTCCTACGAAAAGCTCATGCTGGGAGGATATCTAAT
TTTGACTGTCCATCGCTTTAAGTTGCGGCACTTTTTGGGACCCACCTGTGGGTTGGAAAA
TGACATAAGAATTATTCTGCTGACATGTCATGTGACCTATATCTACCACATGCGTTAGGT
TTTGTAAAAAAAAAAAAAA

Homology of Contig U35_19482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g30640.1	298	3e-131	protein\|translin, putative, expressed
Brachypodium v1_2	Bradi3g27660.1	291	8e-134
Arabidopsis v10	AT2G37020.2	310	3e-99	Translin family protein \| chr2:15546511-15548792 FORWARD LENGTH=310