barSeed - Barley Seed Development Database

Probe CUST_2945_PI390587928

Source Contig U35_475

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2945_PI390587928	Hv_44K_v2	GTAGTAGTTCTCTTGTTATGTGGAGGTGTCTTTTGTATAAAATTCGTCCGTGTTTGTTAA	1255	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.874	1.377	3.945	1.841	0.258	0.162
Raw	940.831	2344.698	6041.933	4334.614	218.516	149.438

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76160.1	1057	6e-24	119 - 177	100	59 / 59	minus	ABC21684
MLOC	MLOC_76160.2	1432	6e-24	46 - 104	100	59 / 59	minus	ABC02672 ABC21684
MLOC	MLOC_76160.3	1436	6e-24	46 - 104	100	59 / 59	minus	ABC21684
MLOC	AK367091	1291	2e-23	1234 - 1291	100	58 / 58	plus	ABC02672 ABC21684
JLOC1	JLOC1_50785.2	1506	3e-24	1324 - 1382	100	59 / 59	plus
JLOC1	JLOC1_50785.1	1468	3e-24	1286 - 1344	100	59 / 59	plus
Harvest21	ABC21684	661	3e-25	587 - 646	100	60 / 60	plus	ABC21684
Harvest35	U35_475	1396	3e-25	1256 - 1315	100	60 / 60	plus

Contig Sequence (1396 bp)

>U35_475 1396 Hv_44K_v2
TCGAGCATTGTTGGCCCTACTGGAACCACACCTCACACCGGCGCACGGCGAGCTCAGTTA
CAGGGGAAGGAACAACAACACACAACACAAGTGAGAGTAGCGTTGCGGGTTGCCGGCGAT
GGCGTGGTGGAAGAACGTCGCCCTGGTCGCCGCGGCGTCCCTCGCCGTGGCCGCGGTGGT
GTGCGCCGGCGTGGCGGCGGCGAGCAAGTTCGACGACGTGGTGCAGCCCAGCTGGGCCAA
CGACCACGTCCTGTACGAGGACGACCTCCTCAAGCTCCGCCTCGACAGCTCCTCCGGCGG
CGGGTTCGCGTCCAAGAACAGGTTCTTGTACGGCAAGGCGACCGCCGACCTCAAGCTCGT
GCCGGGGGACTCCGCCGGCGTCGTCACTGCTTTCTATCTGTCGTCGGCGGGGGACAAGCA
CAACGAGTTCGACTTCGAGTTCCTGGGCAACGTCACCGGCGAGCCGTACCTGGTGCAGAC
CAACCTGTACATCGACGGCGTGGGCAACCGGGAGCAGCGCATCGACCTCTGGTTCGACCC
CACCGCCGACTTCCACACCTACGCCGTGCTGTGGAACCCCAGCCAGGTCGTCTTCCTCGT
CGACGACACCCCCATCCGCGTCTACGACAACAAGAACGCCACCGCCACCAAGCTCAAGGG
CCACCACCGNCACCCCAACGCCACCGCCACCACCCAGGCACAGACGGTGTCGGCCTTCCC
GTCGCCGCAGCCCATGGCGGTGTACAGCTCCATCTGGAACGCGGACGACTGGGCCACGCG
CGGCGGGCTGGTGAAGACGGACTGGTCGCACGCGCCGTTCGTGGCCACGTTCCGGGACGT
GCGCGTGGAGGGCTGCGCCTGGGCCGCCAACGCCACCGACTCGGACGCCGGCGAGGTGGC
GCGCTGCAGCGGCAGCTCGTGGGGCAAGGAGGGCCGGTACTGGTGGAAGGAGAAGGACAT
GCAGGAGCTGTCCGTGCACCAGAGCCACCAGCTGGTGTGGGCGCGCGCGCACCACCTCGT
CTACGACTACTGCGTCGACACCGACCGCTTCCCCGTCCAGCCGCCCGAGTGCGCCGGCCG
CTGATCCGCCGCGTCGTCGCCGGCCGCCTCCATGGGAAGGAATCTTGATTAGTGCTCGTA
GAATGGGGATCCATGACATCGATGGATCGTTGCAAGCTGCTCGTTTCAGTTTCGATTTAA
GTAGGTCCCGTGCGTGTCTCCGTTGAACTTCGATCGTGTTTGCTATCTCTGCCTTGTAGT
AGTTCTCTTGTTATGTGGAGGTGTCTTTTGTATAAAATTCGTCCGTGTTTGTTAAAAAAA
AAAAAAAAAACCATCTTTCGATGACAATGCTCGAATTAGCCCCTTGATACTGCGTTCGTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53950.2	320	0.0	protein\|glycosyl hydrolases family 16 protein, protein, expressed
Brachypodium v1_2	Bradi5g22907.1	315	4e-161
Arabidopsis v10	AT4G03210.1	290	5e-102	\| Symbols: XTH9 \| xyloglucan endotransglucosylase/hydrolase 9 \| chr4:1416019-1417197 FORWARD LENGTH=290