barSeed - Barley Seed Development Database

Probe CUST_29453_PI390587928

Source Contig U35_45752

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29453_PI390587928	Hv_44K_v2	AAGCTTCCCGGTCCCTGCGTTACTGCTGAGTACATCAAGGAGTACGGCAAGGATCTTTTC	440	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.741	1.129	1.107	0.765	1.147	2.027
Raw	4.865	13.433	12.820	13.251	7.122	14.112

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC44986	500	3e-25	441 - 500	100	60 / 60	plus
Harvest35	U35_45752	500	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (500 bp)

>U35_45752 500 Hv_44K_v2
AGCTTCCCGGTCCCTGCGTTCCCTCTCTTCCCTCTCTTCCCTCTTCTTCTCTTCTTCCCT
CCACAATGAGCGCCCAAGATCCCCTCTCCTCTACCAACCCATCGTCAGTGACAAACAACA
CTCAAGATGCCTCGGGACGACAGCCCTCCTCCGCCGCCGCCGGTTCCTCCGAACTCTCCA
GTGCAAAGATAAGCCTGCGCAAGTCGCTGCGCAGCTTCCCCGACTTCCCTATCCCGGGAA
TCAACTTTGTCGACATTATGCCTCTTTTCGCCGACCCAACTGCTCATGCCACCCTTGTCG
AGGCTCTCGAACTCCAGATCGCCGAGGCTTTCCCTACCAAGCCTGATGTTATCGTTGGCC
TCGACGCCCGTGGCTTCCTATTCGGTCCTGGACTTGCGCTCCGTCTCGGCGTTCCTTTCG
CTGCCGTTCGCAAGCAGGGCAAGCTTCCCGGTCCCTGCGTTACTGCTGAGTACATCAAGG
AGTACGGCAAGGATCTTTTC

Homology of Contig U35_45752 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None