- Probe CUST_29451_PI390587928
- Source Contig U35_45754
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29451_PI390587928 | Hv_44K_v2 | AAGACCAACTGGGTCATGCACGAGTACAGGCTCGAGATCAGCAAGCAGTCAACATCCGGC | 284 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.018 | 0.029 | 0.806 | 2.389 | 1.427 | 1.489 |
| Raw | 13.818 | 30.233 | 861.298 | 3871.657 | 850.839 | 952.773 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72737.1 | 857 | 2e-24 | 568 - 627 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_48400.1 | 854 | 8e-25 | 564 - 623 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44991 | 390 | 3e-25 | 285 - 344 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12735 | 782 | 3e-25 | 471 - 530 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45754 | 390 | 3e-25 | 285 - 344 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6147 | 782 | 3e-25 | 471 - 530 | 100 | 60 / 60 | plus |
Contig Sequence (390 bp)
>U35_45754 390 Hv_44K_v2 TGGCGGCCGTCTAAACTATGGACCCCCGGCTGCAGAATTCGCCAGGACGAGACGAGCCAT GGGAGCTTCCCAAGAAGGCCAAGATGGGTCAGAATGAGTGGTACTTCTACTGCCAAAAGG ACCGCAAGTACCCCACCGGGATACGAACCAACCGGGCCACGAAGGTTGGCTACTGGAAGG CCACGGGAAAGGACAAGGAAATCTTCGGGGGGGATTGCACGTCCATGCTCATCGGCATGA AGAAAACATTGGTGTTCTACAAGGGCAGAGCTCCCAGCGGGGAGAAGACCAACTGGGTCA TGCACGAGTACAGGCTCGAGATCAGCAAGCAGTCAACATCCGGCCTGCCCACCTCCATCG CAAATGCCGCTGCCATTAACATGTCTTCCA
Homology of Contig U35_45754 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |