- Probe CUST_29450_PI390587928
- Source Contig U35_45755
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29450_PI390587928 | Hv_44K_v2 | TGTGAGACCAGTGTGATAAAGTGGAGACCCAGTGAATAAAGAAGGAATGATGTGGCAAAA | 13 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.017 | 0.031 | 0.555 | 2.327 | 2.325 | 4.397 |
| Raw | 2.760 | 13.191 | 230.641 | 1173.303 | 556.834 | 1115.252 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC44996 | 364 | 3e-25 | 14 - 73 | 100 | 60 / 60 | minus | ABC44996 |
| Harvest35 | U35_45755 | 364 | 3e-25 | 14 - 73 | 100 | 60 / 60 | minus |
Contig Sequence (364 bp)
>U35_45755 364 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCCACATCATTCCTTCTTTATTCACTGGGTCTCCACTTTATCA CACTGGTCTCACAATGAAATTCTAGGTACTCTCCGGAGGTGGAGGTGCAGGCAGCGTTAT GACGGGAACTGTGTAACCTGCACAGTGAGTGTGTGCGCGCAACCCATTGCCACATACATG TGTAGCCATGGCAAACTTGGCTAGACTGATCCTGGCCAGTTCGTGAGCTGTGAATTTATC ACAGACGCAGTGGATGTCTGTTGCTGCCCTTATCACCTGGCAACATACGCTCCCGTGTAA AAGGGGGTGCTCCCCAACATTCTTCCCAATGTTCCTCCAGCAGTCCCTCATCACCTTACT TTTA
Homology of Contig U35_45755 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |