- Probe CUST_29447_PI390587928
- Source Contig U35_45759
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29447_PI390587928 | Hv_44K_v2 | ATGAGGGCGCGAAGAGAGGAGCCAACCTTGCGCTAGTGGCGAGAAGGGAGGCGAGCCTCC | 198 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.126 | 0.339 | 0.714 | 2.003 | 1.729 | 3.332 |
| Raw | 3.850 | 21.163 | 40.632 | 186.770 | 51.416 | 111.426 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7881.1 | 1198 | 3e-21 | 250 - 309 | 97 | 58 / 60 | plus | ABC04786 ABC37044 |
| MLOC | MLOC_7881.3 | 597 | 3e-21 | 224 - 283 | 97 | 58 / 60 | minus | ABC04786 |
| JLOC1 | JLOC1_5212.2 | 1378 | 2e-21 | 259 - 318 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_5212.1 | 1682 | 2e-21 | 258 - 317 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC45016 | 258 | 3e-25 | 199 - 258 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04786 | 1190 | 6e-22 | 218 - 277 | 97 | 58 / 60 | plus | ABC04786 |
| Harvest35 | U35_45759 | 258 | 3e-25 | 199 - 258 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_733 | 1244 | 6e-22 | 218 - 277 | 97 | 58 / 60 | plus |
Contig Sequence (258 bp)
>U35_45759 258 Hv_44K_v2 GATGACGATGCTGGTGGGGGCCGTNGGCGGCGTANCCCTGGAGCTGGCTCTCGCCGCGCT GCTCCTGCTCTTCCTCCCGCCCTACTACGTCTACAAGCTCACCGCCTCCTTCCTCGGCTC CGGCTTCCCCGACAACGTCTCCGGCAAGGGCGTCCTCATCACCGGCGCCTGCGGGGGGGG GGGGCGAGCACCTGGCGTATGAGGGCGCGAAGAGAGGAGCCAACCTTGCGCTAGTGGCGA GAAGGGAGGCGAGCCTCC
Homology of Contig U35_45759 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |