barSeed - Barley Seed Development Database

Probe CUST_29445_PI390587928

Source Contig U35_19490

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29445_PI390587928	Hv_44K_v2	TACTACACTATTAAAGGAATGAACGTATGTTCACTATGTCTCCTTACTGTGAATCCAACC	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34405.3	1838	3e-22	751 - 810	98	59 / 60	minus	ABC11822
MLOC	MLOC_34405.2	780	3e-22	175 - 234	98	59 / 60	minus	ABC11822
Harvest21	ABC11822	1100	3e-25	1041 - 1100	100	60 / 60	plus	ABC11822
Harvest35	U35_19490	1476	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (1476 bp)

>U35_19490 1476 Hv_44K_v2
GGTTGGATTCACAGTAAGGAGACATAGTGAACATACGTTCATTCCTTTAATAGTGTAGTA
ACAGTTCATGGACATCTGACGACAGGACTTTGGACCGAGCCCATTATATTGTCATCTTCT
GAGTCGTGGACTCACTTCATGGTGACAAAACATCCTGGTGCTGTACTGTTCATGTTCATG
GATATTTTCTTATTAACTGGAGCTCTTATTTTGACGGTAGCACAAGCAGTAATGGTAAGC
TGTCATGTTGACTGATTGCTTAGGACTTTGCTGCAATATTGGTTTGTCATGCCGACTTGT
TCCATACTTTAATTTTGCATGTGATGGGTTAGAAAAAAACTCGGTTGTGAAATGGAAGTT
ATATTTGCCTGCATGCATTGTTGTATTATTATGGTCTGACATTTTCTACAATGGGAATAG
CAAAGAAACACAAGCGCATGACTTGTATTTTGCCTGCAACACTTCCAACCTTGCTATATG
GTTCATCGCAAGAGAATATCTGCTCAGTCCCATATTGATACTCCCATTTGTCCCCGATAT
GCTAGAAAGACCAAGACGGAACACCGCCAGGCTTTTCATAACATGCACTTAACCATGTTT
GATGCAGATAGCCAGGAATCTCACAACTAACGAGGCCGCAAATCAGTCGCGCTACACTTA
TCTTCGTGGGCCTGATGGACGCTTCAGGAATCCTTATAACCAAGACTGGCAGAAGAACTG
CGGCTATTTTCTTGTTAATGGCTACAACAACGACGAGGAGGCTGCATGGCCAACCCTTCA
ACAGACAGTAGAGTGAAGCTATGGTTCCTTGCTAGACCATGCTGGCTGTGCAAGTGTAGA
AATGGGATGATTTTCGTGCATCGAGTTGATGAGGATGGTTGTGTCAGTTGTAAAATCTAA
CGGCCTGGAATTTGAGTAGTCGTTTACAACAAAAGTAAGTACCAACATGCATATTTTTCA
GACACAGCTCCAATCTAGACTCTATCCATCCCTATTTAGATGCTGTGAATATTCTCATCT
TCCAGTGAGAAACTGAATTGCTGTGATATTTTTACTGCTATAGCGGCCGCTATCAAAAGT
ATTCTCGAATTTCCAAGGTGACTGTCGCTACGCCTGTAAAGTAAAAGTAAAGCCGCCCAA
ATCGACCGGCAGAATCGCTCGTCCTTTTCCCCCAAACCAAGTACTCCTACCAAGAACCAA
TAGTCCTCGTTAACGCCATTGTAAACGCATGCCAAATCCCGTCCCAGCCCTTGTGAATCA
CCATCCAGCTATTCGAATTGTGGGTGCAATGACCGCAAAGTATCCGTAGCGCCTGTCTCA
GAACGACCAGCTTCTTGATGCGTTTCGGCATTTTAGCGATTATGCATAAGTGATCGGCAG
GCTGCAGTAGCTCGACTACCAGCGCCAAACGTCCTGTTTCATAAGCCAGCGGCCGCTCGA
GCATTTTCGAAGNGGCCCAATTCGCCCTATAGGAGT

Homology of Contig U35_19490 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None