- Probe CUST_29444_PI390587928
- Source Contig U35_33784
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29444_PI390587928 | Hv_44K_v2 | TTTTTTCTTGCTGAAATTCCCGTGTACATGTAACCGATTTTTCTCGTCGTCGTCGTGCCC | 82 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.283 | 1.491 | 1.766 | 1.023 | 0.428 | 0.392 |
| Raw | 807.965 | 1489.215 | 1529.210 | 1357.217 | 198.942 | 205.550 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51356.1 | 2980 | 3e-21 | 2853 - 2913 | 97 | 59 / 61 | plus | None |
| MLOC | MLOC_51356.2 | 3237 | 3e-21 | 3005 - 3065 | 97 | 59 / 61 | plus | None |
| JLOC1 | JLOC1_32803.1 | 3104 | 2e-21 | 2849 - 2909 | 97 | 59 / 61 | plus | |
| Harvest35 | U35_33784 | 288 | 3e-25 | 83 - 142 | 100 | 60 / 60 | minus |
Contig Sequence (288 bp)
>U35_33784 288 Hv_44K_v2 ATCCTCTCTTTACACTAAGAGTCACCAATCAAACAAACCCGGCTACGGGCTCTGGAAACC CCACAGAAAAAAGATTGGGAGCGGGCACGACGACGACGAGAAAAATCGGTTACATGTACA CGGGAATTTCAGCAAGAAAAAATTACGGGGAGGAAGCTCACACGGTTATGGCGGACAAAT CGTCGCAGACAGTCTTCATGTTAGGCCTCTCATTTACAGGAAGAAGCACCGGAGGGAGAT GGCGAGCAGCTCGTCCATCGCCCTTGGAGACTCTTCCAACCCAGCGAT
Homology of Contig U35_33784 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |