barSeed - Barley Seed Development Database

Probe CUST_29443_PI390587928

Source Contig U35_19491

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29443_PI390587928	Hv_44K_v2	CTCTTATTTTGACGGTAGCACAAGCAGTAATGATAGCCAGGAATCTCACAACTAACGAGG	254	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251305.1	1927	2e-24	1423 - 1482	100	60 / 60	plus	ABC11822 ABC12247
MLOC	MLOC_34405.1	773	2e-24	306 - 365	100	60 / 60	plus	ABC11822
MLOC	MLOC_34405.2	780	2e-24	377 - 436	100	60 / 60	plus	ABC11822
JLOC1	JLOC1_22179.3	1393	8e-25	874 - 933	100	60 / 60	plus
JLOC1	JLOC1_22179.1	962	8e-25	443 - 502	100	60 / 60	plus
Harvest35	U35_19491	754	3e-25	255 - 314	100	60 / 60	plus

Contig Sequence (754 bp)

>U35_19491 754 Hv_44K_v2
TGTATTTTGCATCAGATCTTATGGATCTCCGTATGACTAACATGTGTTTGTTTTATAGAG
AAATAAGTGGGACTTTNTGGTATTTCTTTGTATGGGGATAGNTACAACCCTTCTCGGTGC
TGCCGTTGGATTCCACAGACTTTGGACCGAGCCCATTATATTGTCATCTTCTGAGTCGTG
GACTCACTTCATGGTGACAAAACATCCTGGTGCTGTACTGTTCATGTTCATGGATATTTT
CTTATTAACTGGAGCTCTTATTTTGACGGTAGCACAAGCAGTAATGATAGCCAGGAATCT
CACAACTAACGAGGCCGCAAATCAGTCGCGCTACACTTATCTTCGTGGGCCTGATGGACG
CTTCAGGAATCCTTATAACCAAGACTGGCAGAAGAACTGCGGCTATTTTCTTGTTAATGG
CTACAACAACGACGAGGAGGCTGCATGGCCAACCCTTCAACAGACAGTAGAGTGAAGCTA
TGGTTCCTTGCTAGACCATGCTGGCTGTGCAAGTGTAGAAATGGGATGATTTTCGTGCAT
CGAGTTGATGAGGATGGTTGTGTCAGTTGTAAAATCTAACGGCCTGGAATTTGAGTAGTC
GTTTACAACAAAAGTAAGTACCAACATGCATATTTTTCAGACACAGCTCCAATCTAGACT
CTATCCATCCCTATTTAGATGCTGTGAATATTCTCATCTTCCAGTGAGAAACTGAATTGC
TGTGATATTTTTACTGCTAAAAAAAAAAAAAAAA

Homology of Contig U35_19491 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34860.1	552	2e-74	protein\|palmitoyltransferase TIP1, putative, expressed
Brachypodium v1_2	Bradi4g16522.1	562	3e-81
Arabidopsis v10	None