barSeed - Barley Seed Development Database

Probe CUST_29442_PI390587928

Source Contig U35_19492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29442_PI390587928	Hv_44K_v2	TTCGTGGCATGTTTAGCAGATTCAGCATATGTGTCGCGTTGGATGCAATCACATGGATCT	999	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.502	1.493	1.072	0.943	0.395	0.604
Raw	1756.790	2759.413	1730.620	2455.844	350.898	584.885

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353662	1221	2e-24	1110 - 1169	100	60 / 60	plus	ABC12052
JLOC1	JLOC1_10513.2	796	8e-25	678 - 737	100	60 / 60	plus
Harvest21	ABC12052	1128	3e-25	1000 - 1059	100	60 / 60	plus	ABC12052
Harvest35	U35_19492	1128	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (1128 bp)

>U35_19492 1128 Hv_44K_v2
GCCTACACGTTCTCGCTCCAGTTGCCGCCGCCAGCCCCTCGCCCTTTCGCCGGAGCTCCT
TCGCCGGCAGTAGAGATGGTGAAAGGCGTAGTCCGCTATCAGCCTGGACCGGCATTTCAG
GAGAGTGAAGAGCAGGGCATGCCTGAAATACCGCCATCTGACTCTACAGAATTTTGGCTA
ATACAGTGGCCTCTAAACCATGTAAATGCTTCTGATTTCAATGGTGAAAAGGTTTCTCTT
AAGCTTCATGACGATGGAAACTTGGGAAATTTGGAGAGTTCTTCAGGGAAATCATATGAA
CTTGTTAGCTTTGCTGCTCAACAGCCAGATGCTACTGTCTTCATTCCATCAGGATCTGAA
ATGAAAGCCGTGGGGAAGATTTCACGCAGAGTTTGCTTGGTTCGTTACCCTGAACCTGAG
GAATTGGAGAAAGAGAAGCCAAGTTTTGGGAGTCTTACACCTAGCAGTAGGAGATCTGCA
GGTTCTTCTCGGAAGACTATGTCCCGGTTCAGTGGCGTATCGAAGAACCGTAGCAGCCAA
GGATCAGCATTGTCTCTGGGTCAACAGAGCGTGGAGCCGATGCCCAAACACAAGCAGAAG
AGAAGGGACGAAAGCAGCTTGGGGGGCCACTCAAACGTGTCGGCCAAGTCCTCGGAAGGA
TCCCAGGCTCGTGTCGCAGGGAGCAACACAACCTCCGAGATGCCGCAGACACCGGTGGAG
AAATCCAAGAAGAAGAAAGTTAGGATCCAAGAGTAGTAACAACAAGTGGCAGGCAACGGT
TCCATCAGTCACCCTACCTTGGAGAAGAGATGCTAATTTTCCCTGAACGATCAGCAGCTG
CTTCTCCTCTTGTATGTGTCCAGACAGTTATTGCTTTTTCCTCGATCGGTAGTCCTGAGT
TGCTGGCCTTGGTGTTGCAGGTAGTTGATCTCTGCGACCACGATACAATCGTGAAAGTTA
GTCGTGCTGAATGAAAGCTGTGGAAGTGTGGAGGCAAATTTCGTGGCATGTTTAGCAGAT
TCAGCATATGTGTCGCGTTGGATGCAATCACATGGATCTCCACTCCGCTAGTTTTGTGCT
GCTAAAGAGCCGTCAGCGTTAATGACCCAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15520.1	222	5e-85	protein\|expressed protein
Brachypodium v1_2	Bradi2g09420.1	231	9e-93
Arabidopsis v10	None