barSeed - Barley Seed Development Database

Probe CUST_29438_PI390587928

Source Contig U35_19495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29438_PI390587928	Hv_44K_v2	ACATAACTCAAATTCGTGAATGGAACTATCCGGGCTGGCATATGTAGTTTTTAGAAAAAA	1188	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.281	1.638	1.135	0.956	0.426	0.316
Raw	204.041	397.955	242.232	317.414	49.687	41.232

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12611	1259	3e-25	12 - 71	100	60 / 60	minus	ABC12611
Harvest35	U35_19495	1259	3e-25	1189 - 1248	100	60 / 60	plus

Contig Sequence (1259 bp)

>U35_19495 1259 Hv_44K_v2
GAAGCTTTGAAGGACTTCTTTCTATCAACAGGNGAGACTCCAAGTAGGTTGCATGTGTGA
TAACCTGTTACTGTCCATTATTCTAATGTGTCCTAAATACCATTTTCCGTATTATTCAGT
GAATAACTTTTTAAATAAGCACAGTGAGATATTTTTGCCTCCCATGAACTAAGCAATCAG
CTCATCTATATAGTTGTTGGAATAGATGGCAAATTTGACATGCTAGTATCTCCTAGGGTG
ACTTATTCTGCTTCCCTAAACCATTGAGAGCAATTTGCAGGATGCTGGCTTCCTTTTGTT
GAAGGAGTCGAGAGAATTGGAGAGGAGTCCAATGGCAAGCAAGGGGTCTCCTCTCCATGG
TCCACAAGTGAGGCTCGTTGAGCAGGCCCACAGGCTTTTTGCTGAGACCAAAGAGCATCT
TTTTGAATCCAAATCTGCTGAAGAGCATGGGAAATTGCTAAGAGTGCAGCATCAACTAGA
AGTTTCCACAAAGCAAGCAATATTTGTTGGTTCTAGTGTCAGTGATACAATAAAAACTTG
TATTGTAATGGGAAATGAGCGAGCTGCAGTCAAAGTGAAATCAGAATTCAAGGTTCCTGA
TAAAAGGTGGTACTGGTTGAAGTCATGTGCTTTAGCGACAGTTGGTAATTGGGATGCTTT
GGAAACATTCTCGAGAGAGAAGAGACCACCAGGAGGCTATAAACCTTTCGTGGAAGCATG
CATTGATGCCGGTCAAAAAATGGAAGCTATCAAATATATCCCAAAATTAACAGATCCTGG
TGAAAGATCTGAGGCATACGCACGTCTCAATATGACTGATGAAGCTGAAAAGGCAGCATC
AGAGGCTAACAATGGCGACGAGCTATTTGGTCGCCTGAAGAGTACTCTGGCGCAGAATAC
TCTTATCGACACGCTACGGGATCGACTATCTTTCCAAGGAACGTACTGAGATATGTGCAA
GCACAGTTCGTGATGCCTTATGTTTGTGTTCACTTTTTCATTGTGTATGAATCTCCACTG
TGAATACCCCATCTGTAGAAACTGAGGATTTCCAGCGCGATGGAAAATGTGTAGGGGAGG
GGACGCTGGACAAATAGGAGGTTTTGAAATGTAAATGTGGAATATAGACATGTGGTTCCA
TCGATCCTGTGAACCATGCAGTTTTACTTTATGCTGTATTATAAGTTTACATAACTCAAA
TTCGTGAATGGAACTATCCGGGCTGGCATATGTAGTTTTTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47650.1	885	6e-117	protein\|vacuolar protein sorting-associated protein 16, putative, expressed
Brachypodium v1_2	Bradi2g45987.1	878	2e-121
Arabidopsis v10	AT2G38020.1	858	6e-86	\| Symbols: VCL1, MAN, EMB258 \| vacuoleless1 (VCL1) \| chr2:15910098-15914190 REVERSE LENGTH=858