- Probe CUST_29435_PI390587928
- Source Contig U35_19498
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29435_PI390587928 | Hv_44K_v2 | GTGCGTGCTTGTTTTTCTTCCCCGTGAATAAAAACCGTGTGTGTTTCCCCACGTAAAAAA | 500 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.086 | 0.603 | 0.830 | 3.203 | 1.957 | 1.242 |
| Raw | 6.499 | 3.989 | 7.925 | 56.555 | 10.815 | 6.929 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_39668.1 | 601 | 6e-24 | 533 - 591 | 100 | 59 / 59 | plus | ABC10717 |
| JLOC1 | JLOC1_25879.1 | 759 | 3e-24 | 546 - 604 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC10717 | 570 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus | ABC10717 |
| Harvest35 | U35_19498 | 570 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus |
Contig Sequence (570 bp)
>U35_19498 570 Hv_44K_v2 GCACCATCATCTAGCAAAACAAAAGGCAGTAAACCAGCCAGCCATGGCTAGACGCGCGGC AGCCATCCTTGTGTTGATGCTCTCGCTCCCGGCGGCGGCTCTCCTCGTCTCCGCCGACGG CGCTGACGCGGACACCATCCTCCTCCCTAGCGACGGCGGCGATGGTCTTGCAGCAACACC TCCTGACATAGTAGTGGCGCCGACGGTGAGCGCCGCCGGCGGCGCCCTCGAAGCGGAGAG GCCGTGGGCGTGCTGCAACGGCACCGTGTGCAAGGAGTCGTTTCCGCCGATATGCCGCTG CCTGGACGAGGTGAAGGAGTGCGCCGCCGCGTGCAAGCTGTGCGAGCCGTCCGGGATCAA CCACACCTGCAACGACTGGTACTTTGGCGACCCAGGGCCAAAGTGCGCCTAGGAGGAGCG GCCGTGGACGTGCTGCGACCGGACCGTCTGCACCAAGTCGTTCCCGCCGACTTTCCATGC ATAGGCCTACTGTTAATTGCGTGCGTGCTTGTTTTTCTTCCCCGTGAATAAAAACCGTGT GTGTTTCCCCACGTAAAAAAAAAAAAAAAA
Homology of Contig U35_19498 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |