barSeed - Barley Seed Development Database

Probe CUST_29415_PI390587928

Source Contig U35_45784

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29415_PI390587928	Hv_44K_v2	GCAGTGGAACTAGAGACAATTTGAGTCATGAATAAATAAGCATGTTGCGACCAAAAAAGA	-1	GeneList: black MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.011	0.768	1.987	2.825	5.033
Raw	11.550	44.640	3458.463	11391.353	6404.757	13511.737

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC45072	539	8e-21	23 - 85	95	60 / 63	minus	ABC45072
Harvest35	U35_45784	539	8e-21	23 - 85	95	60 / 63	minus

Contig Sequence (539 bp)

>U35_45784 539 Hv_44K_v2
CCCCTCTCGGATNTTTTTTTTTTCTTTTTTGGTCGCAACATGCTTATTTATTCATGANNC
TCANAATTGTCTCTAGTTCCACTGCCACTCATCCATGGCGAGGCAGTATGGAGTGTTGTG
AACGGTCGTCAAGTTGCAGAACCCCGGCGTGACGAGTATCCTGACGAAGTCCATCTGCAC
CTCCCTAGGGCACCCGGGGAGTTCCATGAGGCCGCTCTGATCGGGACGAGATTTCCGCCC
CATGAAGAAGCGCAACGCTTGGCATCGGCACTGCTGCGGGATGTTTGCAAGCTCCCCGCA
GCACTGCTGCTTGGCGAGGTACGGCGGCCCGGGCGTTTCGATGCGACATGCTTGCTGTTC
CACATAGTCGCGGCAACTTGGGAGTGGAGTGATCGGAGTAGCCGTCCATGGGGTGCAATC
TTCGCTGCCGACGGCGGCAACGGCGGCAAAGATGGAGACTAGGACGGCGGCCACTGAATC
CGTGCAAGGAGTTTCTCTTGCAACAGTGCAGGCCTGTGTCATTGTTATCTTACCTCTGG

Homology of Contig U35_45784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None