barSeed - Barley Seed Development Database

Probe CUST_29410_PI390587928

Source Contig U35_45790

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29410_PI390587928	Hv_44K_v2	TAAGTTGCCGGCATGGGAGGAGTCCAATTGAAATAATTTTCGGTGTACATGACAGATGAT	369	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365212	1775	7e-23	1560 - 1619	98	59 / 60	plus	ABC04928 ABC06870 ABC48407
MLOC	MLOC_78233.2	4088	7e-23	1935 - 1994	98	59 / 60	plus	ABC04928 ABC22963 ABC48407
MLOC	MLOC_78233.1	3391	7e-23	1098 - 1157	98	59 / 60	plus	ABC04928 ABC22963 ABC48407
MLOC	MLOC_78233.3	3631	7e-23	1097 - 1156	98	59 / 60	plus	ABC04928 ABC22963 ABC48407
JLOC1	JLOC1_52140.2	3666	4e-23	1380 - 1439	98	59 / 60	plus
JLOC1	JLOC1_52140.1	3383	4e-23	1097 - 1156	98	59 / 60	plus
Harvest21	ABC45086	433	3e-25	370 - 429	100	60 / 60	plus
Harvest21	ABC04928	1819	1e-23	1555 - 1614	98	59 / 60	plus	ABC04928
Harvest35	U35_45790	433	3e-25	370 - 429	100	60 / 60	plus
Harvest35	U35_1821	1846	1e-23	1570 - 1629	98	59 / 60	plus

Contig Sequence (433 bp)

>U35_45790 433 Hv_44K_v2
TGTTGGGTCATGGGCTGCACAACTACATCCATGCTGAAAGGTGGTAAGGTAATTGCACTT
GGAGATGTATCAGGCACAATCAGAAACAAAGCAAGGATAGACGTACCTGCTCTGATGAAG
CACAGAAATGAGGGTGGTCAGTTGAAAGACTTTCATGGTGCGGAAGTCATGGATTCCTCA
AAGTTGCTGGTGCATGAATGCGATGTCCTCCTCCCATGCGCCTTATGTGGAGTTCTTAAC
AAAGATAATGCACCTGATGTGAAGGCCAAATTTATAATCGAAGCTGCTAATCATCCAATA
ATCCATGTCCCAACACCGTGGTGGATGACAGTTCTTATATCCACCATCATTGGTTTGGTA
AATTCATCATAAGTTGCCGGCATGGGAGGAGTCCAATTGAAATAATTTTCGGTGTACATG
ACAGATGATGGGT

Homology of Contig U35_45790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None