barSeed - Barley Seed Development Database

Probe CUST_29401_PI390587928

Source Contig U35_4702

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29401_PI390587928	Hv_44K_v2	CTGGATGAGTATAATGGCAGTATGGTATGGTATAATGGCAGTATATGCAGATCGAACTAG	1064	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.922	2.133	2.700	1.024	0.236	0.244
Raw	5619.760	20820.530	22298.433	13741.443	1070.455	1211.177

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38930.1	823	2e-24	640 - 699	100	60 / 60	plus	ABC10686
JLOC1	JLOC1_25355.1	824	8e-25	640 - 699	100	60 / 60	plus
Harvest21	ABC47311	408	3e-25	37 - 96	100	60 / 60	minus
Harvest21	ABC10686	1156	3e-25	1065 - 1124	100	60 / 60	plus	ABC10686
Harvest35	U35_4702	1161	3e-25	1065 - 1124	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_4702 1161 Hv_44K_v2
CGAACCCCACACAATCAGCCCGAAGCCTCTGCGCAAGCTCACTCCACTGTCCACTCCACT
CCACTCCACTCCAGCGAGTGTGCGAGCAAGCAGCCAAGAATCACCCACAGAGGAGATGGC
AACGGTGACCGCCGGCCTCCTGGCCGTGGCGTCGCTGCTGCTGCTCGCGGGCGGCGCGTC
GGCGGCGACGCTGGCGCTGTACAACAAGTGCGGCGAGACGGTGTGGCCGGGCATCCAGCC
GGGGGCCGGCAAGGAGATCCTGGCGCGGGGCGGGCTGCAGCTGCTCCCCAACCGGGCCAC
CTCCATCCGCCTCCCCACCGGCTGGTCGGGCCGCGTGTGGGGCCGCCAGGGCTGCCGCTT
CGACGCGGCGGGCCGCGGCAAGTGCGCCACGGGCGACTGCGGCGGCGCCCTCTACTGCAA
CGGCGCCGGCGGCGAGCCCCCGGCCACGCTGGCCGAGATCACGCTGGGCGCGTCCGCCTC
CGCGCTCGACTTCTACGACGTGAGCCTCGTGGACGGCTACAACGTGGCCATCGACATGCG
GCCCTACCACGGCTCCGGCGCCAACTGCCTCCCCGCCGGCTGCGTCAGCGACCTCAACAG
CGTCTGCCCAGCCGGGCTCGCCGTCCGCGGCGGCAACAGGGTCGTCGGGTGCCGCAGCGC
GTGCGCGGCGTTCGGGAGCGCCGAGTACTGCTGCACGGGGCAGTTCGGCGGGCCGCAGCA
GTGCAAGCCGACGACCTACTCGCGGCTGTTCAAGCGGGCATGCCCCAAGGCGTATTCGTA
TGCTTACGACGACAAGACCTCCATCCTCACCTGCGCCGCCGGCACCTCCTACGTCGTCAC
CTTCTGCCCCCACCGCCGTTAGACCAGACCACGCCGCCACGGATCTAGACCCGAAAACGG
TGGTAGCAGTACTTATCTTGTTTCAGTTGAGGAGCCGGTGCTCGCCTTGGGTGCGTGGCG
TTGTTGCTGCGTTGTTCTTTGGTTCTTGCTGTCGTTGGATCGATGATAATAACACTAGTA
GTGGTAGCACCAAGGAAGTGAACCAGTGATGGTTTGTGGTAGGCCTGGATGAGTATAATG
GCAGTATGGTATGGTATAATGGCAGTATATGCAGATCGAACTAGTTATTATATTTTTATT
TTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g47600.1	252	2e-137	protein\|thaumatin family domain containing protein, expressed
Brachypodium v1_2	Bradi1g33540.1	249	2e-145
Arabidopsis v10	AT1G18250.2	244	3e-103	\| Symbols: ATLP-1 \| Pathogenesis-related thaumatin superfamily protein \| chr1:6277024-6278005 REVERSE LENGTH=244